Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0395
(326 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g02970.1 68416.m00292 phosphate-responsive 1 family protein s... 30 0.32
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 28 1.7
At5g54290.1 68418.m06762 cytochrome c biogenesis protein family ... 27 2.2
At5g43020.1 68418.m05248 leucine-rich repeat transmembrane prote... 26 6.8
At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase cyc... 26 6.8
At3g50370.1 68416.m05508 expressed protein 26 6.8
At3g16000.1 68416.m02024 matrix-localized MAR DNA-binding protei... 26 6.8
At2g27350.5 68415.m03295 OTU-like cysteine protease family prote... 26 6.8
At2g27350.4 68415.m03294 OTU-like cysteine protease family prote... 26 6.8
At2g27350.3 68415.m03293 OTU-like cysteine protease family prote... 26 6.8
At2g27350.2 68415.m03292 OTU-like cysteine protease family prote... 26 6.8
At2g27350.1 68415.m03291 OTU-like cysteine protease family prote... 26 6.8
At4g32330.2 68417.m04600 expressed protein 25 9.0
At4g32330.1 68417.m04599 expressed protein 25 9.0
At2g43680.2 68415.m05430 calmodulin-binding family protein simil... 25 9.0
At2g43680.1 68415.m05429 calmodulin-binding family protein simil... 25 9.0
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 25 9.0
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 25 9.0
>At3g02970.1 68416.m00292 phosphate-responsive 1 family protein
similar to phi-1 (phosphate-induced gene) [Nicotiana
tabacum] GI:3759184; contains Pfam profile PF04674:
Phosphate-induced protein 1 conserved region
Length = 332
Score = 30.3 bits (65), Expect = 0.32
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = +1
Query: 25 KMTSTPFNVGLNDGARLSSRVLRPPGGGHTNIFDSEPEPPRTGRRAVPPSATSTF-SHG 198
K +TP+N + SS + P T +F S P TGR V P F SHG
Sbjct: 251 KSETTPYNDDVKKNHESSSMYIVDPATKCTRVFGSGAFPGFTGRIRVDPITGGAFNSHG 309
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 27.9 bits (59), Expect = 1.7
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +2
Query: 38 HHSTLASMTELVYQAGCS-APPVVATLTSSIPNRSHRGPGAVPFHQAQRALSATD 199
HH +S + LVY + S APP+ L+SS S P VP + + +A +
Sbjct: 223 HHQRFSSPSFLVYPSNSSFAPPLQGVLSSS--TESEAVPQQVPAAEGEATTTAPE 275
>At5g54290.1 68418.m06762 cytochrome c biogenesis protein family low
similarity to cytochrome c biogenesis protein CcdA
[Paracoccus pantotrophus] GI:11095328; contains Pfam
profile PF02683: Cytochrome C biogenesis protein
transmembrane region
Length = 354
Score = 27.5 bits (58), Expect = 2.2
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = -1
Query: 218 AFGSSPC--PWLKVLVALGGTARRPVLGGS 135
A +SPC P L L+ T+R PV+GGS
Sbjct: 261 ALAASPCSTPVLATLLGYVATSRDPVIGGS 290
>At5g43020.1 68418.m05248 leucine-rich repeat transmembrane protein
kinase, putative
Length = 669
Score = 25.8 bits (54), Expect = 6.8
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -3
Query: 177 CAWWNGTAPGPRWLRFGIEDV 115
C WW T G R +R IED+
Sbjct: 65 CQWWGVTCYGNRVVRLVIEDL 85
>At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein weak similarity to
CARS-Cyp [Homo sapiens] GI:1117968; contains Pfam
profile PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 837
Score = 25.8 bits (54), Expect = 6.8
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 126 FRTGATEDRAPCRSTKRNEHFQPRTRR*AESDQRHFSSDXRSVTP 260
+RT + DR+P R + R++ + R+RR F S R TP
Sbjct: 693 YRTSPSPDRSPYRFSDRSDRDRFRSRR--RFSPSRFRSPLRGRTP 735
>At3g50370.1 68416.m05508 expressed protein
Length = 2179
Score = 25.8 bits (54), Expect = 6.8
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Frame = +2
Query: 74 YQAGCSAPPVVATLTSSIPNRSH----RGPGAVPFHQAQRALSATDKEMSR 214
Y + APP T T S PN ++ GPG P Q Q+ S S+
Sbjct: 2062 YSSTTGAPPAKPTSTLSDPNSNNTQNPNGPGFKPPQQQQQQSSQEKNTQSQ 2112
>At3g16000.1 68416.m02024 matrix-localized MAR DNA-binding
protein-related similar to matrix-localized MAR DNA
binding protein MFP1 GI:1771158 from [Lycopersicon
esculentum]
Length = 726
Score = 25.8 bits (54), Expect = 6.8
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = -1
Query: 236 TEVPLVAFGSSPCPWLKVLVALG 168
TEV +V+ G+SP P+L +L LG
Sbjct: 111 TEVAVVSEGTSPNPFLALLNGLG 133
>At2g27350.5 68415.m03295 OTU-like cysteine protease family protein
contains Pfam profile PF02338: OTU-like cysteine
protease
Length = 388
Score = 25.8 bits (54), Expect = 6.8
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 152 PVLGGSGSESKMLVWPPPGGRSTL 81
PV GGS S+S + PPP ST+
Sbjct: 105 PVSGGSNSDSPPVPAPPPKPSSTV 128
>At2g27350.4 68415.m03294 OTU-like cysteine protease family protein
contains Pfam profile PF02338: OTU-like cysteine
protease
Length = 388
Score = 25.8 bits (54), Expect = 6.8
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 152 PVLGGSGSESKMLVWPPPGGRSTL 81
PV GGS S+S + PPP ST+
Sbjct: 105 PVSGGSNSDSPPVPAPPPKPSSTV 128
>At2g27350.3 68415.m03293 OTU-like cysteine protease family protein
contains Pfam profile PF02338: OTU-like cysteine
protease
Length = 506
Score = 25.8 bits (54), Expect = 6.8
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 152 PVLGGSGSESKMLVWPPPGGRSTL 81
PV GGS S+S + PPP ST+
Sbjct: 105 PVSGGSNSDSPPVPAPPPKPSSTV 128
>At2g27350.2 68415.m03292 OTU-like cysteine protease family protein
contains Pfam profile PF02338: OTU-like cysteine
protease
Length = 505
Score = 25.8 bits (54), Expect = 6.8
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 152 PVLGGSGSESKMLVWPPPGGRSTL 81
PV GGS S+S + PPP ST+
Sbjct: 105 PVSGGSNSDSPPVPAPPPKPSSTV 128
>At2g27350.1 68415.m03291 OTU-like cysteine protease family protein
contains Pfam profile PF02338: OTU-like cysteine
protease
Length = 505
Score = 25.8 bits (54), Expect = 6.8
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 152 PVLGGSGSESKMLVWPPPGGRSTL 81
PV GGS S+S + PPP ST+
Sbjct: 105 PVSGGSNSDSPPVPAPPPKPSSTV 128
>At4g32330.2 68417.m04600 expressed protein
Length = 436
Score = 25.4 bits (53), Expect = 9.0
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +1
Query: 121 FDSEPEPPRTGRRAVPPS 174
F EP+PP+T + +PP+
Sbjct: 267 FYQEPQPPKTELKKIPPT 284
>At4g32330.1 68417.m04599 expressed protein
Length = 437
Score = 25.4 bits (53), Expect = 9.0
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +1
Query: 121 FDSEPEPPRTGRRAVPPS 174
F EP+PP+T + +PP+
Sbjct: 268 FYQEPQPPKTELKKIPPT 285
>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 669
Score = 25.4 bits (53), Expect = 9.0
Identities = 13/43 (30%), Positives = 17/43 (39%)
Frame = +1
Query: 55 LNDGARLSSRVLRPPGGGHTNIFDSEPEPPRTGRRAVPPSATS 183
L + R + V RPP N + + P P R P TS
Sbjct: 66 LGEAERDHNLVFRPPTPDRPNPYSASPPPRPASPRVASPRPTS 108
>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 668
Score = 25.4 bits (53), Expect = 9.0
Identities = 13/43 (30%), Positives = 17/43 (39%)
Frame = +1
Query: 55 LNDGARLSSRVLRPPGGGHTNIFDSEPEPPRTGRRAVPPSATS 183
L + R + V RPP N + + P P R P TS
Sbjct: 65 LGEAERDHNLVFRPPTPDRPNPYSASPPPRPASPRVASPRPTS 107
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 25.4 bits (53), Expect = 9.0
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +2
Query: 38 HHSTLASMTELVYQAGCS-APPVVATLTSS 124
HH +S + LVY + S APP+ L+SS
Sbjct: 223 HHQRFSSPSFLVYPSNSSFAPPLQGVLSSS 252
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 25.4 bits (53), Expect = 9.0
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +1
Query: 67 ARLSSRVLRPPGGGHTNIFDSEPEPPRTGRRAVPPSATS--TFSHGQGDEPKATNGTS 234
A S+ P GGGH + S+P+P + P S TFS QG + + T+
Sbjct: 188 AAASATPFYPCGGGHGGVQFSQPQPFYHHLSSYNPHHYSPPTFSMQQGSRNRLSASTT 245
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,386,955
Number of Sequences: 28952
Number of extensions: 127698
Number of successful extensions: 503
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 370553816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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