Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0394
         (845 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.07c |srp102||signal recognition particle receptor beta ...    46   9e-06
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar...    45   2e-05
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy...    42   1e-04
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar...    37   0.004
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo...    32   0.089
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|...    29   0.83 
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    29   1.1  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    28   1.9  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    27   3.3  
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr...    27   3.3  
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2...    27   4.4  
SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces po...    27   4.4  
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual      26   5.8  
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    26   5.8  

>SPAC23H4.07c |srp102||signal recognition particle receptor beta
           subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 227

 Score = 45.6 bits (103), Expect = 9e-06
 Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 4/100 (4%)
 Frame = +1

Query: 217 FLSKVYSSQLSIV--MGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVD 390
           F  K    +L  V  +G SDSGKT LF  L Y + + T  S++ N  E +       +VD
Sbjct: 28  FTRKTIQKKLPAVFLIGPSDSGKTSLFCELIYKEKKTTVPSIEPN--EAVWKYGAW-LVD 84

Query: 391 LPGQERLRNKFFEQHKS--SAKGIVFVIDSINIQKEIRDV 504
           LPG  R +     +     + K +VFV++S  I +++ +V
Sbjct: 85  LPGHPRAKRWITTKFSGNYNVKAVVFVLNSATIDRDVHEV 124



 Score = 30.7 bits (66), Expect = 0.27
 Identities = 16/41 (39%), Positives = 27/41 (65%)
 Frame = +3

Query: 561 LLILCNKQDQPLAKGSQVIKGLLEKEINLVRVTKSNQLQSV 683
           LLI CNK D   A+ ++ I+ LL+ E++ +   K+ QL+S+
Sbjct: 143 LLIACNKFDLFTAQPAEKIQQLLKAELHNILEEKNLQLESI 183


>SPBC1539.08 |||ADP-ribosylation factor, Arf
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 184

 Score = 44.8 bits (101), Expect = 2e-05
 Identities = 25/86 (29%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
 Frame = +1

Query: 223 SKVYSS-QLSIVM-GLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLP 396
           S+++S+ ++ I+M GL  +GKT +  +L  +Q   T  ++  N+E     N    + D+ 
Sbjct: 14  SRLFSNKEMRILMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNVETVTYKNIKFNVWDVG 73

Query: 397 GQERLRNKFFEQHKSSAKGIVFVIDS 474
           GQ+++R   +  + +  KG++FV+DS
Sbjct: 74  GQDKIR-PLWRHYFTGTKGLIFVVDS 98


>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 180

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 20/75 (26%), Positives = 42/75 (56%)
 Frame = +1

Query: 250 IVMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLPGQERLRNKFFE 429
           +++GL  +GKT +  +L   +   T  ++  N+E     N +  + D+ GQ+++R   + 
Sbjct: 21  LMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYRNISFTVWDVGGQDKIR-PLWR 79

Query: 430 QHKSSAKGIVFVIDS 474
            +  + +GI+FV+DS
Sbjct: 80  HYFQNTQGIIFVVDS 94


>SPAC22F3.05c |alp41||ADP-ribosylation factor
           Alp41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 186

 Score = 36.7 bits (81), Expect = 0.004
 Identities = 20/77 (25%), Positives = 39/77 (50%)
 Frame = +1

Query: 250 IVMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLPGQERLRNKFFE 429
           +++GL ++GKT +   L      +   +    I           I D+ GQ+ LRN F++
Sbjct: 20  LLLGLDNAGKTTILKCLLNEDVNEVSPTFGFQIRTLEVEGLRFTIWDIGGQKTLRN-FWK 78

Query: 430 QHKSSAKGIVFVIDSIN 480
            +  S + I++V+DS++
Sbjct: 79  NYFESTEAIIWVVDSLD 95


>SPBC31F10.06c |sar1||ADP-ribosylation factor
           Sar1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 190

 Score = 32.3 bits (70), Expect = 0.089
 Identities = 18/80 (22%), Positives = 36/80 (45%)
 Frame = +1

Query: 250 IVMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLPGQERLRNKFFE 429
           + +GL ++GKT L   L   +      ++    EE    N      DL G ++ R + + 
Sbjct: 24  LFLGLDNAGKTTLLHMLKNDRLAVMQPTLHPTSEELAIGNVRFTTFDLGGHQQAR-RLWR 82

Query: 430 QHKSSAKGIVFVIDSINIQK 489
            +     GIV+++D  + ++
Sbjct: 83  DYFPEVNGIVYLVDCCDFER 102


>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 29.1 bits (62), Expect = 0.83
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -1

Query: 455 IPLALLLCCSKNLFLSLSCPGRSTIFNVLLEVIYSSIFSFI 333
           +P+A +L C   +      P RST++N L EV  S I SF+
Sbjct: 463 LPIAFILGCLVGILQHYIAP-RSTMYNSLFEVTGSIITSFL 502


>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 16/59 (27%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
 Frame = +3

Query: 516 YTILCDPIIQGNTTPLLILCNKQDQPLAKGSQVIKGL-LEKEIN-LVRVTKSNQLQSVD 686
           Y  +C  I++ N+T  L   +  ++ +  G+Q +K L + +E++ L+R + +N L+ V+
Sbjct: 410 YKSICQAILRMNSTKALACLDYLNENIFTGNQTMKCLEIHQELSELIRNSSTNYLEPVE 468


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 9/22 (40%), Positives = 18/22 (81%)
 Frame = +2

Query: 158  RYITLLSLIVLAVTLIFWWIFS 223
            +YI ++S+IVL +T + W++F+
Sbjct: 1440 QYINIISIIVLVLTSLAWFLFN 1461


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +1

Query: 391 LPGQERLRNKFFEQHKSSAKGIVFVIDSI-NIQKEIRDVADTYTQS 525
           L   + L N FFE+ K+  +  ++++DS+ ++  EIR +   ++ S
Sbjct: 440 LAEDQLLLNNFFEELKNKLESDLYLLDSVFDLVPEIRSLLQQFSTS 485


>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 201

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 10/95 (10%)
 Frame = +1

Query: 250 IVMGLSDSGKTLLFVRLAYSQYRQTFTS---MKENIEEYITSNKT--LKIVDLPGQERLR 414
           + +G    GKT L  R  Y Q+  T+ +   +    +     ++T  L++ D  GQER R
Sbjct: 15  VFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR 74

Query: 415 NKFFEQ-HKSSAKGIVFVIDS----INIQKEIRDV 504
           +        SS   IV+ I +    +N +K I DV
Sbjct: 75  SLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDV 109


>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 18/82 (21%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
 Frame = +1

Query: 154 STIHNLT*PYCSSSNPHILVDFLSKVYSSQLSI-VMGLSDSGKTLLFVRLAYSQ-YRQTF 327
           + IH    P+     P++L+DFL+  Y+S  ++ ++ L+     ++   L Y   Y + +
Sbjct: 252 NVIHKRVIPFLQK--PNLLMDFLTDAYNSHHAVSLLALNGLFTLMISHNLDYPLFYPKLY 309

Query: 328 TSMKENIEEYITSNKTLKIVDL 393
             +  N+    T ++  +++DL
Sbjct: 310 ALLDRNLLYLKTRSRFFRLLDL 331


>SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 367

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 198 PSYFGGFSLEGILFATQYCNGPIRLW 275
           P+YFGG++LE      ++ N  ++ W
Sbjct: 292 PAYFGGYTLENYFAIQKHFNLTVKEW 317


>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = -3

Query: 459 HNSLSTTLVLFKEFISQSLLSRQIN--YFQCF-IRSYILFNIF 340
           HNSLST   L    +  S L + IN  +F  F +  + LF IF
Sbjct: 202 HNSLSTNAALSASVVLASRLEKSINVFFFILFAVHWFALFPIF 244


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 15/53 (28%), Positives = 29/53 (54%)
 Frame = -1

Query: 491 SFCILIESITNTIPLALLLCCSKNLFLSLSCPGRSTIFNVLLEVIYSSIFSFI 333
           SFC+ + ++T  +  ALL+  + +L +    P    I  ++L +I   +FSF+
Sbjct: 523 SFCVFLVALTRVVSFALLIPIAFDLAI---IP--KVIIAIILIIIQGLVFSFM 570


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,415,095
Number of Sequences: 5004
Number of extensions: 73057
Number of successful extensions: 241
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)