Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0394
(845 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1311 - 26039741-26039930,26040185-26040316,26040528-260406... 49 5e-06
02_01_0226 + 1476529-1476585,1477207-1477297,1478247-1478362,147... 46 3e-05
02_05_0413 + 28773869-28773925,28774045-28774135,28774515-287746... 46 5e-05
06_03_0025 - 15577231-15577420,15577682-15577813,15578025-155781... 43 3e-04
06_01_0098 + 818374-818427,818537-818627,818753-818868,818962-81... 43 3e-04
10_08_1062 + 22626262-22626318,22626404-22626494,22626601-226267... 42 5e-04
05_05_0295 - 23912502-23912507,23912631-23912712,23913020-239131... 42 8e-04
01_06_1108 + 34574299-34574446,34575000-34575070,34575246-345753... 42 8e-04
01_01_1138 - 9019049-9019159,9019525-9019606,9020059-9020177,902... 42 8e-04
07_01_0842 + 6840943-6841288,6841800-6841970,6842762-6842832,684... 41 0.001
03_06_0420 + 33794045-33794192,33794831-33794901,33795093-337952... 41 0.001
02_02_0711 - 13180406-13180423,13180483-13180563,13181026-131811... 37 0.018
05_03_0038 + 7612866-7613132,7615691-7616608 31 0.87
05_01_0033 + 220125-220190,220274-224445,224863-224949,225048-22... 29 6.2
01_06_0556 + 30207124-30207581,30207692-30207901,30208016-302081... 29 6.2
04_03_0922 + 20834195-20836603 28 8.1
04_02_0006 + 8455219-8457469,8457560-8457924 28 8.1
02_03_0407 - 18675368-18675378,18676047-18676977,18677323-186773... 28 8.1
01_06_0874 + 32646039-32646269,32646351-32646450,32647400-326474... 28 8.1
04_04_1122 + 31052497-31052629,31053133-31053191,31053285-310535... 26 8.3
>08_02_1311 -
26039741-26039930,26040185-26040316,26040528-26040676,
26040807-26040893,26041338-26041420,26042008-26042137
Length = 256
Score = 48.8 bits (111), Expect = 5e-06
Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 9/84 (10%)
Frame = +1
Query: 250 IVMGLSDSGKTLLFVRLA-YSQYRQTFTSMKENIEEYITSN--------KTLKIVDLPGQ 402
++ GLS SGKT+LF +L S ++ T TSM++N + ++ + K + +VD+PG
Sbjct: 56 VLSGLSGSGKTILFYQLRDGSTHQGTVTSMEQNNDTFVLHSELERRGKVKPVHVVDVPGH 115
Query: 403 ERLRNKFFEQHKSSAKGIVFVIDS 474
RL+ K ++ A GIV+V+D+
Sbjct: 116 ARLKPK-LDEVLPQAAGIVYVVDA 138
Score = 46.8 bits (106), Expect = 2e-05
Identities = 24/61 (39%), Positives = 34/61 (55%)
Frame = +3
Query: 504 SRYLYTILCDPIIQGNTTPLLILCNKQDQPLAKGSQVIKGLLEKEINLVRVTKSNQLQSV 683
+ YLY IL + P+LI CNK D+ A + IK LEKE+N +R ++ N + S
Sbjct: 149 AEYLYDILTKATVVKKRVPVLIFCNKTDKVTAHSKEFIKKQLEKELNKLRESR-NAISSA 207
Query: 684 D 686
D
Sbjct: 208 D 208
>02_01_0226 +
1476529-1476585,1477207-1477297,1478247-1478362,
1478834-1478893,1479000-1479065,1479847-1480047
Length = 196
Score = 46.4 bits (105), Expect = 3e-05
Identities = 22/82 (26%), Positives = 48/82 (58%)
Frame = +1
Query: 250 IVMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLPGQERLRNKFFE 429
+++GL +GKT + RL + T ++ N+E+ N + D+ GQE+LR ++
Sbjct: 21 VMLGLDAAGKTTILYRLHMGEVLSTVPTVGFNVEKVQYKNVVFTVWDVGGQEKLR-PLWK 79
Query: 430 QHKSSAKGIVFVIDSINIQKEI 495
+ S++ +++V+DS++ ++ I
Sbjct: 80 MYLSNSDALIYVVDSLDRERII 101
>02_05_0413 +
28773869-28773925,28774045-28774135,28774515-28774630,
28775627-28775686,28775767-28775832,28776499-28776693
Length = 194
Score = 45.6 bits (103), Expect = 5e-05
Identities = 23/86 (26%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Frame = +1
Query: 235 SSQLSIVM-GLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLPGQERL 411
+S++ +VM GL +GKT + +L + T ++ N+E+ N + D+ GQE+L
Sbjct: 15 TSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVMFTVWDVGGQEKL 74
Query: 412 RNKFFEQHKSSAKGIVFVIDSINIQK 489
R + + ++ G+++V+DS++ ++
Sbjct: 75 R-PLWRHYFNNTDGLIYVVDSLDRER 99
>06_03_0025 -
15577231-15577420,15577682-15577813,15578025-15578173,
15579012-15579071,15593208-15593297,15593604-15593871,
15594517-15594608,15595355-15595441,15597333-15597440,
15597709-15597822,15598253-15598420,15599442-15599579,
15599699-15599908,15600986-15601237,15601965-15602111,
15603327-15603443
Length = 773
Score = 43.2 bits (97), Expect = 3e-04
Identities = 24/67 (35%), Positives = 36/67 (53%)
Frame = +3
Query: 495 QRCSRYLYTILCDPIIQGNTTPLLILCNKQDQPLAKGSQVIKGLLEKEINLVRVTKSNQL 674
Q + YLY IL + +LI CNK D+ A + IK LEKEIN +R ++ + +
Sbjct: 663 QVVAEYLYDILTKATVVKKRIHVLIFCNKTDKVTAHSKEFIKKQLEKEINKLRESRKD-I 721
Query: 675 QSVDPSE 695
S D ++
Sbjct: 722 SSADTTD 728
>06_01_0098 +
818374-818427,818537-818627,818753-818868,818962-819087,
819175-819357
Length = 189
Score = 43.2 bits (97), Expect = 3e-04
Identities = 20/80 (25%), Positives = 46/80 (57%)
Frame = +1
Query: 250 IVMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLPGQERLRNKFFE 429
+++GL +GKT + RL + + ++ N+E+ N + D+ GQ++LR +
Sbjct: 20 LMLGLDAAGKTTILYRLHIGEVLSSIPTIGFNVEKVEYKNVAFTVWDVGGQDKLR-PLWR 78
Query: 430 QHKSSAKGIVFVIDSINIQK 489
Q+ +A +++V+DS++ ++
Sbjct: 79 QYFRNADALIYVVDSMDRER 98
>10_08_1062 +
22626262-22626318,22626404-22626494,22626601-22626716,
22627035-22627094,22627204-22627269,22627726-22627914
Length = 192
Score = 42.3 bits (95), Expect = 5e-04
Identities = 19/80 (23%), Positives = 45/80 (56%)
Frame = +1
Query: 250 IVMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLPGQERLRNKFFE 429
+++GL +GKT + +L + T ++ N+E+ N + D+ GQE+LR +
Sbjct: 21 VMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVVFTVWDVGGQEKLR-PLWR 79
Query: 430 QHKSSAKGIVFVIDSINIQK 489
+ ++ +++V+DS++ ++
Sbjct: 80 HYFNNTDALIYVVDSLDRER 99
>05_05_0295 -
23912502-23912507,23912631-23912712,23913020-23913138,
23913480-23913599,23913927-23913997,23914525-23914672
Length = 181
Score = 41.5 bits (93), Expect = 8e-04
Identities = 22/86 (25%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Frame = +1
Query: 250 IVMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLPGQERLRNKFFE 429
+++GL +GKT + +L + T ++ N+E N + + D+ GQ+++R +
Sbjct: 21 LMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR-PLWR 79
Query: 430 QHKSSAKGIVFVIDSINIQK--EIRD 501
+ + +G++FV+DS + ++ E RD
Sbjct: 80 HYFQNTQGLIFVVDSNDRERVVEARD 105
>01_06_1108 +
34574299-34574446,34575000-34575070,34575246-34575365,
34575471-34575488,34575708-34575826,34576244-34576325,
34576537-34576542
Length = 187
Score = 41.5 bits (93), Expect = 8e-04
Identities = 22/86 (25%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Frame = +1
Query: 250 IVMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLPGQERLRNKFFE 429
+++GL +GKT + +L + T ++ N+E N + + D+ GQ+++R +
Sbjct: 21 LMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR-PLWR 79
Query: 430 QHKSSAKGIVFVIDSINIQK--EIRD 501
+ + +G++FV+DS + ++ E RD
Sbjct: 80 HYFQNTQGLIFVVDSNDRERVVEARD 105
>01_01_1138 -
9019049-9019159,9019525-9019606,9020059-9020177,
9020977-9021096,9021313-9021383,9021801-9021948
Length = 216
Score = 41.5 bits (93), Expect = 8e-04
Identities = 23/86 (26%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Frame = +1
Query: 223 SKVYSS-QLSIVM-GLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLP 396
S+++S ++ I+M GL +GKT + +L + T ++ N+E N + + D+
Sbjct: 10 SRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 69
Query: 397 GQERLRNKFFEQHKSSAKGIVFVIDS 474
GQ+++R + + + +G++FV+DS
Sbjct: 70 GQDKIR-PLWRHYFQNTQGLIFVVDS 94
>07_01_0842 +
6840943-6841288,6841800-6841970,6842762-6842832,
6843068-6843187,6843654-6843772,6844045-6844126,
6844254-6844259
Length = 304
Score = 41.1 bits (92), Expect = 0.001
Identities = 19/75 (25%), Positives = 42/75 (56%)
Frame = +1
Query: 250 IVMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLPGQERLRNKFFE 429
+++GL +GKT + +L + T ++ N+E N + + D+ GQ+++R +
Sbjct: 144 LMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR-PLWR 202
Query: 430 QHKSSAKGIVFVIDS 474
+ + +G++FV+DS
Sbjct: 203 HYFQNTQGLIFVVDS 217
>03_06_0420 +
33794045-33794192,33794831-33794901,33795093-33795212,
33795466-33795584,33795775-33795856,33795984-33795989
Length = 181
Score = 41.1 bits (92), Expect = 0.001
Identities = 19/75 (25%), Positives = 42/75 (56%)
Frame = +1
Query: 250 IVMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLPGQERLRNKFFE 429
+++GL +GKT + +L + T ++ N+E N + + D+ GQ+++R +
Sbjct: 21 LMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR-PLWR 79
Query: 430 QHKSSAKGIVFVIDS 474
+ + +G++FV+DS
Sbjct: 80 HYFQNTQGLIFVVDS 94
>02_02_0711 -
13180406-13180423,13180483-13180563,13181026-13181188,
13182096-13182206,13182365-13182429
Length = 145
Score = 37.1 bits (82), Expect = 0.018
Identities = 20/80 (25%), Positives = 45/80 (56%)
Frame = +1
Query: 250 IVMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLPGQERLRNKFFE 429
+++GL +SGKT + +++ ++ NI+ +L I D+ GQ+ +R+ ++
Sbjct: 20 LMVGLDNSGKTTIVLKINGEDTGVISPTLGFNIKTIKYHKYSLNIWDIGGQKTIRS-YWR 78
Query: 430 QHKSSAKGIVFVIDSINIQK 489
+ G+V+V+DS +I++
Sbjct: 79 NYFEQTDGLVWVVDSSDIRR 98
>05_03_0038 + 7612866-7613132,7615691-7616608
Length = 394
Score = 31.5 bits (68), Expect = 0.87
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = -1
Query: 758 LNVERIRNLLPSLPRNDPDVAFRRIDGLQLIRFGHTN 648
L + +LLP RNDP+V ++DGL+L F + N
Sbjct: 148 LQIPANTDLLPRYTRNDPNVVLGKVDGLKLY-FAYLN 183
>05_01_0033 +
220125-220190,220274-224445,224863-224949,225048-225084,
225296-225356,225666-226918
Length = 1891
Score = 28.7 bits (61), Expect = 6.2
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -3
Query: 819 QSXFHRHSCWPSTLRNS 769
Q FHRH CWP R S
Sbjct: 40 QQCFHRHLCWPGVRRAS 56
>01_06_0556 +
30207124-30207581,30207692-30207901,30208016-30208100,
30208517-30208676,30208768-30208844,30208985-30209032,
30209504-30209594,30209703-30210004,30210214-30210495,
30210695-30211011,30211113-30211273,30211556-30211665,
30211752-30211902,30212438-30212578,30212688-30212857,
30213485-30213817,30213981-30214271,30214356-30214439,
30214620-30214753,30214946-30215173,30215273-30215444,
30215621-30215875,30215963-30216232
Length = 1509
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 202 HILVDFLSKVYSSQLSIVMGLSDSGKTLLFVRLA 303
HIL D V S++++++G SGKT L + LA
Sbjct: 210 HILKDVSGIVRPSRMTLLLGPPSSGKTTLLLALA 243
>04_03_0922 + 20834195-20836603
Length = 802
Score = 28.3 bits (60), Expect = 8.1
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 164 ITLLSLIVLAVTLIFWWIFSRRY 232
++ +L +LA+ L+ WW S+RY
Sbjct: 456 LSFAALFMLAIALVIWWNKSKRY 478
>04_02_0006 + 8455219-8457469,8457560-8457924
Length = 871
Score = 28.3 bits (60), Expect = 8.1
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = -3
Query: 480 IDRINHKHNSLSTTL-VLFKEFISQSLLSRQINYFQ 376
I RI+ N+LS+ + V F+ FIS + L+ NYF+
Sbjct: 393 IQRIDLSENNLSSEVPVFFENFISLAHLNLSYNYFE 428
>02_03_0407 -
18675368-18675378,18676047-18676977,18677323-18677376,
18677809-18678039,18678112-18678319,18678405-18678433,
18678638-18678706,18678832-18678893,18679056-18679133,
18679243-18679315,18681135-18681260
Length = 623
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 560 PSNIVQQTGPAISKRKPSYQRITRKRNKFSS 652
PS +V +GP +SKR P+ R + K ++ +S
Sbjct: 518 PSGLVGYSGPLVSKRAPTPARASPKASRTAS 548
>01_06_0874 +
32646039-32646269,32646351-32646450,32647400-32647461,
32647503-32647609,32647689-32647839,32647925-32648073,
32648557-32648657,32648730-32648887,32648968-32649015,
32649028-32649142,32649212-32649543
Length = 517
Score = 28.3 bits (60), Expect = 8.1
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Frame = +1
Query: 340 ENIEEYITSNKTLKIVDLPGQERLRNKFFEQHKSSAKG-----IVFVIDSINIQKEIRDV 504
E +E + N L IVD G+ + FE+ + ++ ++FV+DS +I + D
Sbjct: 179 EGVERFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATKPDLVIFVMDS-SIGQAAFDQ 237
Query: 505 ADTYTQSCVIRSFRETQL 558
A + QS + + T++
Sbjct: 238 AQAFKQSVSVGAVIVTKM 255
>04_04_1122 + 31052497-31052629,31053133-31053191,31053285-31053579,
31054099-31054279,31054739-31054956,31055522-31055739,
31055842-31055958,31056106-31056128,31056223-31056438,
31056536-31056677,31056822-31057067,31057659-31057856,
31058331-31058379,31060835-31060911,31061266-31061551,
31061661-31061841,31062149-31062344,31062630-31062738,
31062861-31062961,31063155-31063267,31063347-31063442,
31063531-31063746,31063857-31063995,31064087-31064332,
31064605-31064940
Length = 1396
Score = 25.8 bits (54), Expect(2) = 8.3
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -3
Query: 414 SQSLLSRQINYFQCFIRSYILFNIFFHRSK 325
SQS+ ++NY +C+++ L + F R K
Sbjct: 1072 SQSIYQDELNYLECWVKDEKLDQLPFARQK 1101
Score = 20.6 bits (41), Expect(2) = 8.3
Identities = 6/13 (46%), Positives = 10/13 (76%)
Frame = -3
Query: 492 FFLYIDRINHKHN 454
F+ +DR++HK N
Sbjct: 1024 FYTTLDRLDHKRN 1036
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,385,389
Number of Sequences: 37544
Number of extensions: 406598
Number of successful extensions: 1010
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -