Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0394
         (845 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37042| Best HMM Match : Arf (HMM E-Value=0)                         46   4e-05
SB_53421| Best HMM Match : Arf (HMM E-Value=0)                         45   9e-05
SB_14706| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   4e-04
SB_56255| Best HMM Match : Arf (HMM E-Value=0)                         41   0.001
SB_42281| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   0.001
SB_11310| Best HMM Match : Arf (HMM E-Value=0)                         38   0.014
SB_57342| Best HMM Match : Arf (HMM E-Value=0)                         37   0.024
SB_18358| Best HMM Match : Arf (HMM E-Value=0)                         36   0.041
SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.67 
SB_24843| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  
SB_35102| Best HMM Match : Spore_permease (HMM E-Value=2.7)            29   3.6  
SB_10900| Best HMM Match : I-set (HMM E-Value=0)                       29   3.6  
SB_34777| Best HMM Match : VWA (HMM E-Value=0)                         29   6.3  
SB_49442| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_47358| Best HMM Match : F5_F8_type_C (HMM E-Value=3.2e-09)          28   8.3  
SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_8201| Best HMM Match : FYVE (HMM E-Value=0.067)                     28   8.3  

>SB_37042| Best HMM Match : Arf (HMM E-Value=0)
          Length = 188

 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 28/94 (29%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
 Frame = +1

Query: 208 LVDFLSKVYSSQLSIVM-GLSDSGKTLLFVRLAYSQYRQTFTSMKENIEE-YITSNKTLK 381
           ++   S+  + Q+ IVM GL  +GKT +  +L   +   T  ++  N+E    T N TL 
Sbjct: 8   VITLFSEFGNRQVRIVMLGLDAAGKTTILYKLKLKETVSTIPTIGFNVETLQPTKNVTLT 67

Query: 382 IVDLPGQERLRNKFFEQHKSSAKGIVFVIDSINI 483
           I D+ GQ+++R   +  +    +G++FV+DS ++
Sbjct: 68  IWDVGGQDKIR-PLWRHYFQGTEGLLFVVDSSDV 100


>SB_53421| Best HMM Match : Arf (HMM E-Value=0)
          Length = 625

 Score = 44.8 bits (101), Expect = 9e-05
 Identities = 21/79 (26%), Positives = 44/79 (55%)
 Frame = +1

Query: 253 VMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLPGQERLRNKFFEQ 432
           ++GL ++GKT +  RL   +   T  ++  N+E     N +  + D+ GQ+++R   +  
Sbjct: 1   MIGLDNAGKTTILYRLKLEEVVSTVPTLGFNVETVTYKNISFTVWDIGGQDKIR-ALWRV 59

Query: 433 HKSSAKGIVFVIDSINIQK 489
           +    +GI+FV+DS + ++
Sbjct: 60  YYQGCQGIIFVVDSADRER 78


>SB_14706| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 85

 Score = 42.7 bits (96), Expect = 4e-04
 Identities = 27/71 (38%), Positives = 40/71 (56%)
 Frame = +3

Query: 594 LAKGSQVIKGLLEKEINLVRVTKSNQLQSVDPSEGNIGVVPR*RG*KISNSLHI*KLKSN 773
           +AK ++ IK  LEKEIN  RVT+S  LQ +D S  +  V  + +  + ++   +  +K  
Sbjct: 1   MAKSARAIKAQLEKEINTQRVTRSAALQGLDGSSKSALVGKKGKDFEFAD---VEPVKVE 57

Query: 774 FAECSANTNDD 806
           F ECSA  N D
Sbjct: 58  FVECSAKGNAD 68


>SB_56255| Best HMM Match : Arf (HMM E-Value=0)
          Length = 181

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 19/75 (25%), Positives = 42/75 (56%)
 Frame = +1

Query: 250 IVMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLPGQERLRNKFFE 429
           +++GL  +GKT +  +L   +   T  ++  N+E     N +  + D+ GQ+++R   + 
Sbjct: 21  LMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR-PLWR 79

Query: 430 QHKSSAKGIVFVIDS 474
            +  + +G++FV+DS
Sbjct: 80  HYFQNTQGLIFVVDS 94


>SB_42281| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 21/79 (26%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
 Frame = +1

Query: 241 QLSIVM-GLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLPGQERLRN 417
           Q+ I+M GL  +GKT +  +L   +   T  ++  N+E     N +  + D+ GQ+++R 
Sbjct: 17  QMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVESVEYKNISFTVWDVGGQDKIR- 75

Query: 418 KFFEQHKSSAKGIVFVIDS 474
             +  +  + +G+++V+DS
Sbjct: 76  PLWRHYFQNTQGLIYVVDS 94


>SB_11310| Best HMM Match : Arf (HMM E-Value=0)
          Length = 255

 Score = 37.5 bits (83), Expect = 0.014
 Identities = 19/75 (25%), Positives = 39/75 (52%)
 Frame = +1

Query: 250 IVMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLPGQERLRNKFFE 429
           +++GL  +GKT +   L   +   T  ++  N+E     N    + D+ GQ+++R   + 
Sbjct: 94  LMVGLDAAGKTTILYHLKLDEPVNTIPTIGFNVEVVEYKNIKFTVWDIGGQDKIR-LLWR 152

Query: 430 QHKSSAKGIVFVIDS 474
            +    +G++FV+DS
Sbjct: 153 LYFQETQGLIFVVDS 167


>SB_57342| Best HMM Match : Arf (HMM E-Value=0)
          Length = 457

 Score = 36.7 bits (81), Expect = 0.024
 Identities = 21/78 (26%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
 Frame = +1

Query: 277 KTLLFVRLAYSQYRQTFTSMKENIEEYIT-SNKTLKIVDLPGQERLRNKFFEQHKSSAKG 453
           KT +  +L   +   T  ++  N+E      N T  + D+ GQ+++R + +  +   A+G
Sbjct: 122 KTTILYKLKLKETVNTVPTVAFNVETISPCKNITFSVWDIGGQDKIR-RLWRHYFQGAEG 180

Query: 454 IVFVIDSINIQK--EIRD 501
           I+FV+DS + ++  E+R+
Sbjct: 181 IIFVVDSADKERIFEVRE 198


>SB_18358| Best HMM Match : Arf (HMM E-Value=0)
          Length = 214

 Score = 35.9 bits (79), Expect = 0.041
 Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
 Frame = +1

Query: 250 IVMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYIT-SNKTLKIVDLPGQERLRNKFF 426
           +++GL  SGKT +  R  + +Y  T  +   N+E          K+ D+ G+E+ R   +
Sbjct: 25  VMLGLDKSGKTSILYRNKFREYVNTVPTTAFNVETIRPFKGIRFKVWDIGGREQNR-PLW 83

Query: 427 EQHKSSAKGIVFVIDSINIQK--EIRD 501
           + +      +++V+DS +  K  E RD
Sbjct: 84  KAYARQTDAVIYVVDSTSAGKLEEARD 110


>SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2250

 Score = 31.9 bits (69), Expect = 0.67
 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 7/75 (9%)
 Frame = +1

Query: 340 ENIEEYITSNKTLKIVDLPGQ--ERLRNKFFEQHKSSAK----GI-VFVIDSINIQKEIR 498
           +NIE++ T  KT  I+  PG+  E +  K  ++ K  A     G   FV D I+++   R
Sbjct: 643 KNIEDFWTPEKTKTIITGPGENGEPVETKAEDESKKDAAYSEFGFNQFVSDQISLE---R 699

Query: 499 DVADTYTQSCVIRSF 543
            ++DT  Q+C  RS+
Sbjct: 700 TISDTRHQACKQRSY 714


>SB_24843| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 265

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
 Frame = +1

Query: 250 IVMGLSDSGKTLLFVRLAYSQY-RQTFTSMKENI-EEYITSNKT---LKIVDLPGQERLR 414
           I++G S+ GKT L  RL   ++  +T T++  +  E+ +  N     L++ D  GQER R
Sbjct: 50  IIIGDSNVGKTCLAYRLCTGKFPERTETTIGVDFWEKSLELNGEFVKLQLWDTAGQERFR 109

Query: 415 NKFFEQHKSSAKGIVFVID 471
                 +  +   +VF+ D
Sbjct: 110 KSMVCHYYRNVNAVVFMYD 128


>SB_35102| Best HMM Match : Spore_permease (HMM E-Value=2.7)
          Length = 464

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
 Frame = -3

Query: 471 INHKHNSLSTTLVLFKEFISQSL--LSRQINYFQCFI-RSYILFNIFFHRSKSLSVLRVS 301
           I H H SLSTT+V     +S ++  + R ++     + RS  +  +  HRS S++++ V 
Sbjct: 310 IVHVHRSLSTTIVYVNRPLSITIVHVHRSLSITIVHVHRSLSITIVHVHRSLSITIVHVH 369

Query: 300 ESYKQQSLARV**AHYNTELRRVYLREKIHQN 205
            S     +      H++  +  VY    ++ N
Sbjct: 370 RSLSTTIVY----VHHSLSITIVYAHRSVNYN 397


>SB_10900| Best HMM Match : I-set (HMM E-Value=0)
          Length = 1642

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +1

Query: 181 YCSSSNPHILVDFLSKVYSSQLSI 252
           YC++SNPH  + FL+KV +  +S+
Sbjct: 812 YCNASNPHASMRFLAKVPAPPVSV 835


>SB_34777| Best HMM Match : VWA (HMM E-Value=0)
          Length = 1268

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 533 SDHSGKHNSPSNIVQQTGPAISKRKPSYQRITR 631
           ++ SG H   SN VQQT P I +   S  ++++
Sbjct: 444 AEQSGHHTENSNSVQQTKPTIDRTSNSDSKLSK 476


>SB_49442| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 914

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +3

Query: 531 DPIIQGNTTPLLILCNKQDQPLAKGSQVIKGL--LEKEINLVRVTKSNQLQSVDPSE 695
           DPI+ G     L++C K  + LAK  + +K +  ++ EIN +      +++ + P E
Sbjct: 50  DPIVYGKENSRLLICTKCYKRLAKLERALKHVDSVKLEINELFTATKRRVKRLRPPE 106


>SB_47358| Best HMM Match : F5_F8_type_C (HMM E-Value=3.2e-09)
          Length = 535

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
 Frame = +1

Query: 181 YCSSSNPHILVDFLSKVYSSQLSIVMGLSDSGKTLLFVRLAYSQYRQTFTSMK--ENIEE 354
           +C+ S   + VDF S V   +   + G     K +  ++ ++S     F + K   NIEE
Sbjct: 311 WCAESGEFLRVDFGS-VKHVRAIYMQGHPAEAKWVAKIKFSHSADGLFFKTFKGYNNIEE 369

Query: 355 YITSNKTLKIVDLPGQERLRNKFFEQHKSSAKG 453
           ++ +  T KIV L     L  +    H +  +G
Sbjct: 370 FMANVDTHKIVRLSMDPYLFTRILHIHPTEFEG 402


>SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1024

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 8/54 (14%)
 Frame = -1

Query: 467 ITNTIPLALLLCCSKNLFLSLSCP--------GRSTIFNVLLEVIYSSIFSFIE 330
           +T T  + L++  +   FLS++CP         R+ +   L  ++YSS+FSF++
Sbjct: 496 MTYTSQVLLVVVLTFERFLSITCPIFHRNHVTFRAAVITSLTILLYSSVFSFVQ 549



 Score = 28.3 bits (60), Expect = 8.3
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 455 IPLALLLCCSKNLFLSLSCPGRSTIFNVLLEVIYSSI 345
           IPL LL+ C K  F    C   S++   +++++  SI
Sbjct: 640 IPLKLLVTCKKGKFSGQVCNPNSSVVKYVIQIVQWSI 676


>SB_8201| Best HMM Match : FYVE (HMM E-Value=0.067)
          Length = 166

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +3

Query: 531 DPIIQGNTTPLLILCNKQDQPLAKGSQVIKGL--LEKEINLVRVTKSNQLQSVDPSE 695
           DPI+ G     L++C K  + LAK  + +K +  ++ EIN +      +++ + P E
Sbjct: 50  DPIVYGKENSRLLICTKCYKRLAKLERALKHVDSVKLEINELFTATKRRVKRLRPPE 106


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,632,621
Number of Sequences: 59808
Number of extensions: 500166
Number of successful extensions: 1354
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1353
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2395401800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)