Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0394
         (845 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   3.5  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   3.5  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   3.5  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   6.2  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   8.2  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 244 VAKSIPSRENPPKYEGYC 191
           V  +IP+ ENP  Y  +C
Sbjct: 269 VTAAIPTSENPADYRYFC 286


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 244 VAKSIPSRENPPKYEGYC 191
           V  +IP+ ENP  Y  +C
Sbjct: 269 VTAAIPTSENPADYRYFC 286


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 244 VAKSIPSRENPPKYEGYC 191
           V  +IP+ ENP  Y  +C
Sbjct: 269 VTAAIPTSENPADYRYFC 286


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -3

Query: 519 CIGICYISDFFLYIDRINHKHNSLSTTLVL 430
           C+GI ++S    Y+   + +  SLS +++L
Sbjct: 247 CVGISFLSVLVFYLPSDSGEKVSLSISILL 276


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -2

Query: 286 AKSCQSLIGPLQY*VAKSIPSREN 215
           AK C+  +GP+ +   +  P +EN
Sbjct: 45  AKECEQFLGPVGFGGVQVSPVQEN 68


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,180
Number of Sequences: 438
Number of extensions: 5403
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)