Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0393
         (845 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    35   0.013
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    27   3.3  
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    27   4.4  
SPCC61.03 |||conserved protein|Schizosaccharomyces pombe|chr 3||...    26   5.8  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    26   5.8  
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    26   7.7  

>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
            Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 35.1 bits (77), Expect = 0.013
 Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
 Frame = +2

Query: 284  EHFEIHNLKSRTGTNVDSDSLSKVLRGLGFSVTVLHNLRAEDINRYIQQISEMDH--TDN 457
            E F    +K++T T   ++ L K  + L  ++  LH+++  +INR + ++ +  +  TD 
Sbjct: 1088 ERFRRQLIKTKT-TGKANEDLGKYAKALDVAIMQLHSMKMNEINRIVDELWKQTYCGTDI 1146

Query: 458  DCLLVAVLSHGELGMLY 508
            D +L+   S G+    Y
Sbjct: 1147 DTILIRSDSEGKGNRTY 1163


>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 673

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 18/45 (40%), Positives = 21/45 (46%)
 Frame = +3

Query: 42  GRVQLFARLLRFVIFKMADEEKKNNGSGTEQRKNGNEDEGDAWGS 176
           G V  F+ LLRFV    A E K    SGT+  K G+      W S
Sbjct: 231 GHVYCFSCLLRFVETPTAAEVKAAETSGTKIVKCGHRSCPICWDS 275


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = +2

Query: 413 NRYIQQISEMDHTDNDCLLVAVLSHG---ELGMLYPKTLIINQIICGITSLLINVQL*LE 583
           N   QQ S + +T +  L +  L      E  +    +L+ N I+CG TSL+    L L+
Sbjct: 308 NEVSQQDSSVTNTSSRILGIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQ 367

Query: 584 NQSCSLF 604
           N+   L+
Sbjct: 368 NELSKLY 374


>SPCC61.03 |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 327

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +1

Query: 559 DKCPTLAGKPKLFFIQACQGDKLDGGIT 642
           D C  LAGK  L  IQ  Q D +  G T
Sbjct: 193 DACNQLAGKLNLLIIQKGQSDIISDGAT 220


>SPCC1235.05c |fft2||fun thirty related protein
            Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 90   MADEEKKNNGSGTEQRKNGNEDEGD 164
            M DEE  NNG+ T+    GNE +G+
Sbjct: 1089 MLDEE--NNGNNTKPEITGNESDGE 1111


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 22/74 (29%), Positives = 36/74 (48%)
 Frame = +2

Query: 182 IFTRATLCENACRKICSLL*HEPQYRGMAIIFNHEHFEIHNLKSRTGTNVDSDSLSKVLR 361
           ++T  T+CE   ++I SLL      R +  + N E     NLK      + +D + K L 
Sbjct: 770 LYTNLTICEGYKKQISSLL---VTARKLLQLVNME----FNLKGPFPVGIYNDLIIK-LE 821

Query: 362 GLGFSVTVLHNLRA 403
            LG  + VL+ +R+
Sbjct: 822 NLGIRLVVLNRVRS 835


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,579,953
Number of Sequences: 5004
Number of extensions: 74890
Number of successful extensions: 169
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)