Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0393
(845 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0751 - 27769616-27769684,27769795-27769917,27769998-277707... 30 2.0
11_04_0147 - 14095039-14095937,14096914-14097379 29 3.5
01_01_0272 - 2249662-2249721,2250110-2250335,2250419-2250615,225... 29 4.7
10_07_0110 + 12977702-12977958,12978374-12978527,12978661-129787... 29 6.2
05_07_0310 + 29135875-29136052,29136206-29136617,29136723-291368... 29 6.2
05_07_0051 - 27338512-27338617,27338790-27338950 28 8.1
04_04_1400 - 33259716-33260069,33260172-33260219,33260471-332605... 28 8.1
04_01_0285 - 3794628-3794801,3794935-3795090,3795232-3795729 28 8.1
>04_04_0751 - 27769616-27769684,27769795-27769917,27769998-27770770,
27771407-27771773,27772104-27772217,27772307-27772403,
27772968-27773088,27773168-27773252,27773349-27773498,
27773630-27773746,27773819-27773905,27773981-27774049,
27774125-27774181,27774266-27774349,27774477-27774513,
27774721-27774869,27776053-27776538,27776743-27776886,
27776961-27777509,27778332-27778526,27779226-27779310,
27779570-27779670,27779689-27780360,27781101-27781433,
27781957-27782038,27782258-27782334,27782713-27782817,
27783810-27783944,27784437-27785159,27785882-27786663,
27787480-27789187
Length = 2891
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 843 SRSVXISLWRSHSSQFLHKGDCINPRATSCVSPR 742
SR + LWR H + LHK + P T+ +PR
Sbjct: 2615 SRDTTVILWRIHQAGSLHKKNAPEPPPTTPTTPR 2648
>11_04_0147 - 14095039-14095937,14096914-14097379
Length = 454
Score = 29.5 bits (63), Expect = 3.5
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 320 GTNVDSDSLSKVLRGLGFSVTVLH-NLRAED 409
G + L+ VLR GFS+TVLH LRA D
Sbjct: 17 GHTIPMFHLAAVLRSRGFSITVLHTELRAPD 47
>01_01_0272 -
2249662-2249721,2250110-2250335,2250419-2250615,
2250707-2250955,2251047-2251176,2251473-2251564,
2251735-2251855,2251940-2252028,2252149-2252271,
2252379-2252506,2253039-2253147,2253701-2254000
Length = 607
Score = 29.1 bits (62), Expect = 4.7
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 117 GSGTEQRKNGNEDEGDAWGSHGSSQGRRYAKMPVERYAH 233
GSG+ ++ NG + S GS G++ K R+ H
Sbjct: 541 GSGSRKKSNGKHENSSDDDSDGSCDGKKKKKAKKTRFTH 579
>10_07_0110 +
12977702-12977958,12978374-12978527,12978661-12978798,
12978903-12979133,12979228-12979371,12979516-12979606,
12979798-12979868,12980014-12980128,12980313-12980431,
12980539-12980604,12980701-12980829,12980919-12981062,
12981522-12981704
Length = 613
Score = 28.7 bits (61), Expect = 6.2
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = -2
Query: 799 IPPQRRLHKPKS--HELCFSKSN-NLVPLRTQSKSQHELGFCRMKTKNHLFQCWIMLFHH 629
IP R+ KP L +S ++ ++V LR S++ + C+ + KN CW F
Sbjct: 537 IPSGHRIGKPAPLFKGLNYSPTSIDIVKLRQNSEAHLQAICCKKEVKNIQAICWDTQFVE 596
Query: 628 LTYHLGKL 605
+HL L
Sbjct: 597 YLFHLTNL 604
>05_07_0310 +
29135875-29136052,29136206-29136617,29136723-29136867,
29137944-29138102,29138183-29138242,29138349-29138546
Length = 383
Score = 28.7 bits (61), Expect = 6.2
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +3
Query: 87 KMADEEKKNNGSGTEQRKNGNEDEGDAWGSHGSSQGRRYAKMPV 218
K A+ E+ N R G D G +G + + GRR A PV
Sbjct: 327 KPAEGERYYNPGRGRGRGRGRGDRGGFYGGYNGNGGRRQAAAPV 370
>05_07_0051 - 27338512-27338617,27338790-27338950
Length = 88
Score = 28.3 bits (60), Expect = 8.1
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +3
Query: 123 GTEQRKNGNEDEGDAWGSHGSSQGRRYAKMPVE 221
G Q NG E EG GS+ GRR+ +M E
Sbjct: 55 GVPQSVNGEETEGIGRRRGGSNDGRRHGEMAPE 87
>04_04_1400 -
33259716-33260069,33260172-33260219,33260471-33260596,
33260850-33260900,33260963-33261055,33261217-33261272,
33261465-33261522,33262306-33262365,33262513-33262623,
33263368-33263949,33264026-33264097
Length = 536
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = +3
Query: 87 KMADEEKKNNGSGTEQRKNGNEDEGDAWGSHGSSQGRRYAKMPVER 224
K+ + +++ G G+E +ED+ D GS S + ER
Sbjct: 126 KVGGDREEDKGGGSESGSGSDEDDSDGSGSDDSEDSEEERRREEER 171
>04_01_0285 - 3794628-3794801,3794935-3795090,3795232-3795729
Length = 275
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = -3
Query: 786 GDCINPRATSCVSPRVITWYR*EHNQKVSMNWDSVG 679
G P++ SC +PR + W + W SVG
Sbjct: 216 GSKARPKSDSCAAPREVEWGTGNEGDQRGSKWRSVG 251
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,361,623
Number of Sequences: 37544
Number of extensions: 454808
Number of successful extensions: 1195
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1195
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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