Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0393
         (845 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50| Best HMM Match : Peptidase_C14 (HMM E-Value=0)                  73   2e-13
SB_50362| Best HMM Match : Peptidase_C14 (HMM E-Value=0)               72   5e-13
SB_54787| Best HMM Match : Peptidase_C14 (HMM E-Value=0)               64   2e-10
SB_22562| Best HMM Match : No HMM Matches (HMM E-Value=.)              61   1e-09
SB_21140| Best HMM Match : Peptidase_C14 (HMM E-Value=0)               57   2e-08
SB_23468| Best HMM Match : Peptidase_C14 (HMM E-Value=8.7e-34)         56   5e-08
SB_17986| Best HMM Match : No HMM Matches (HMM E-Value=.)              53   3e-07
SB_7059| Best HMM Match : Peptidase_C14 (HMM E-Value=5.1e-33)          33   0.39 
SB_19622| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.39 
SB_11317| Best HMM Match : Trypsin (HMM E-Value=3e-08)                 31   1.2  
SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24)               31   1.6  
SB_40367| Best HMM Match : ECH (HMM E-Value=3.3)                       30   2.1  
SB_56231| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_43284| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.3  
SB_55277| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_50| Best HMM Match : Peptidase_C14 (HMM E-Value=0)
          Length = 427

 Score = 73.3 bits (172), Expect = 2e-13
 Identities = 34/72 (47%), Positives = 42/72 (58%)
 Frame = +1

Query: 556 ADKCPTLAGKPKLFFIQACQGDKLDGGITLSNTETDGXXXXXYRIPIHADFLIVFSTVPG 735
           A K   L GKPK+F  QACQG +   G     T+         ++P+ ADFL  +STVPG
Sbjct: 290 AFKGDNLVGKPKIFIFQACQGHEYMDG--KDATDAGPEDANRVQVPVEADFLYAYSTVPG 347

Query: 736 YYSWRNTTRGSW 771
           YYSWRN+  GSW
Sbjct: 348 YYSWRNSVNGSW 359



 Score = 65.3 bits (152), Expect = 6e-11
 Identities = 33/88 (37%), Positives = 54/88 (61%), Gaps = 4/88 (4%)
 Frame = +2

Query: 257 RGMAIIFNHEHF----EIHNLKSRTGTNVDSDSLSKVLRGLGFSVTVLHNLRAEDINRYI 424
           RG+A+I N++ F     +H    R GTNVD DSL K  + L F V V +N    + NR I
Sbjct: 190 RGVAVIINNKDFLPASGMHRYP-RNGTNVDRDSLEKTFKALQFDVEVHNNKTTYETNRII 248

Query: 425 QQISEMDHTDNDCLLVAVLSHGELGMLY 508
           +++ +  +++ + ++ A+L+HGE G+LY
Sbjct: 249 KELGQRSYSNYNAMIFAILTHGEEGILY 276


>SB_50362| Best HMM Match : Peptidase_C14 (HMM E-Value=0)
          Length = 501

 Score = 72.1 bits (169), Expect = 5e-13
 Identities = 39/86 (45%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
 Frame = +1

Query: 550 FTADKCPTLAGKPKLFFIQACQGDKLDGGITLSNT-ETDGXXXXXYRI-PIHADFLIVFS 723
           F  + CPTLA KPKLFFIQAC+G   D GI    T + D          P  + FL+ ++
Sbjct: 369 FKGNACPTLAHKPKLFFIQACRGQDFDRGIQADATRDMDASDAVRQNAEPNESHFLLGYA 428

Query: 724 TVPGYYSWRNTTRGSWVYAISFVEEL 801
           T PGY SWR+   GSW   ISF+ E+
Sbjct: 429 TPPGYVSWRSQVHGSWY--ISFLCEV 452



 Score = 58.4 bits (135), Expect = 7e-09
 Identities = 25/84 (29%), Positives = 46/84 (54%)
 Frame = +2

Query: 257 RGMAIIFNHEHFEIHNLKSRTGTNVDSDSLSKVLRGLGFSVTVLHNLRAEDINRYIQQIS 436
           RG+ +I +++HF+   L+ R G   D ++L +    L F V +  +  A ++    ++ S
Sbjct: 270 RGICLIISNQHFDKPELRKRDGNEQDVENLKRTFENLHFVVEIRQDKTASEMYTIAREFS 329

Query: 437 EMDHTDNDCLLVAVLSHGELGMLY 508
            +DH+  D  +  +LSHG LG +Y
Sbjct: 330 SIDHSAYDLFVCCILSHGMLGSIY 353


>SB_54787| Best HMM Match : Peptidase_C14 (HMM E-Value=0)
          Length = 277

 Score = 63.7 bits (148), Expect = 2e-10
 Identities = 29/80 (36%), Positives = 48/80 (60%)
 Frame = +1

Query: 532 DNLWYYFTADKCPTLAGKPKLFFIQACQGDKLDGGITLSNTETDGXXXXXYRIPIHADFL 711
           ++L   F    CP+L GKPK+FF+QAC+G K +  +    ++++        +P  +DFL
Sbjct: 143 ESLTNKFRGSTCPSLQGKPKVFFLQACRGAKKE--LVAVESDSEPVPIRHSGLPSDSDFL 200

Query: 712 IVFSTVPGYYSWRNTTRGSW 771
           I +++ PGY S+R+   GSW
Sbjct: 201 ICYASSPGYESYRHPELGSW 220



 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 22/84 (26%), Positives = 41/84 (48%)
 Frame = +2

Query: 257 RGMAIIFNHEHFEIHNLKSRTGTNVDSDSLSKVLRGLGFSVTVLHNLRAEDINRYIQQIS 436
           +G  +I N++ F   +   R G+  D   L ++    G +V  + N  + ++   +++ S
Sbjct: 50  KGYVLIINNQEFPSRSDVERKGSAEDVKQLYQLFDDFGMTVKTIQNKTSLEMLELLEETS 109

Query: 437 EMDHTDNDCLLVAVLSHGELGMLY 508
           E D T  DC +  +LSHG    +Y
Sbjct: 110 EKDFTKFDCFICIILSHGSHSGIY 133


>SB_22562| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 61.3 bits (142), Expect = 1e-09
 Identities = 33/78 (42%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
 Frame = +1

Query: 532 DNLWYYFTADKCPTLAGKPKLFFIQACQGDKLDGGITLSNTETD--GXXXXXYRIPIHAD 705
           D +   F    CP LA KPKLFFIQAC+GD +D G  +S    +          +P  AD
Sbjct: 20  DEITGKFQGTNCPQLATKPKLFFIQACRGDDVDKGYVVSRGHRNHHHEEELPVTLPSEAD 79

Query: 706 FLIVFSTVPGYYSWRNTT 759
           FLI +ST  G  S+R  T
Sbjct: 80  FLIAYSTTKGKVSFRRYT 97


>SB_21140| Best HMM Match : Peptidase_C14 (HMM E-Value=0)
          Length = 377

 Score = 57.2 bits (132), Expect = 2e-08
 Identities = 34/96 (35%), Positives = 43/96 (44%), Gaps = 22/96 (22%)
 Frame = +1

Query: 550 FTADKCPTLAGKPKLFFIQACQGDKLDGGITLSNT----------------------ETD 663
           F   +   L GKPKLFF+QAC+G   D G  +                         E D
Sbjct: 258 FNGYQAKDLIGKPKLFFLQACRGGDFDHGARMEQIDSPTDVEEKTTTEQIIDEIFPEEID 317

Query: 664 GXXXXXYRIPIHADFLIVFSTVPGYYSWRNTTRGSW 771
                   +P  ADFLI ++TVPGY SWR+  +GSW
Sbjct: 318 SGFLEKSSLPSEADFLIAYATVPGYVSWRHQEKGSW 353


>SB_23468| Best HMM Match : Peptidase_C14 (HMM E-Value=8.7e-34)
          Length = 212

 Score = 55.6 bits (128), Expect = 5e-08
 Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 13/86 (15%)
 Frame = +1

Query: 550 FTADKCPTLAGKPKLFFIQACQGDKLDGGITLSN----TETDGXXXXXYRIPIH------ 699
           F+   C +LAGKPKLFFIQAC+G+K D G  + +     E        + +  H      
Sbjct: 66  FSNALCRSLAGKPKLFFIQACRGEKKDFGTIVQDGPKPPEEHQETPYKFDLSPHNKGAST 125

Query: 700 ---ADFLIVFSTVPGYYSWRNTTRGS 768
              ADFL+ +STV G+ S+RNT  GS
Sbjct: 126 AEMADFLLAYSTVGGHASFRNTADGS 151


>SB_17986| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 724

 Score = 53.2 bits (122), Expect = 3e-07
 Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 12/92 (13%)
 Frame = +1

Query: 532 DNLWYYFTADKCPTLAGKPKLFFIQACQGDKLDGGITLSNT------------ETDGXXX 675
           ++L   F +  C TLAGKPK+FF+QAC+G   +    +S++            E D    
Sbjct: 578 EDLMTEFKSLHCATLAGKPKMFFVQACRGSDKENLENISHSTPSFDSIPGEVLERDSSLP 637

Query: 676 XXYRIPIHADFLIVFSTVPGYYSWRNTTRGSW 771
                P+ AD L+ ++T PGY ++R+ T GS+
Sbjct: 638 RSLN-PVEADVLLAYATPPGYVAYRSPTDGSF 668



 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 25/81 (30%), Positives = 45/81 (55%)
 Frame = +2

Query: 257 RGMAIIFNHEHFEIHNLKSRTGTNVDSDSLSKVLRGLGFSVTVLHNLRAEDINRYIQQIS 436
           RG+ +I N+ ++ I N   R G N D ++L ++ + L F V +  +L + D+    Q+ +
Sbjct: 487 RGICLIINNMNY-IGN--RRNGANNDVNALRRLFKDLHFCVIIKTDLASRDLRETFQEYA 543

Query: 437 EMDHTDNDCLLVAVLSHGELG 499
            MDH++ D     ++SHG  G
Sbjct: 544 MMDHSNFDAFACVIMSHGGEG 564


>SB_7059| Best HMM Match : Peptidase_C14 (HMM E-Value=5.1e-33)
          Length = 296

 Score = 32.7 bits (71), Expect = 0.39
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +1

Query: 691 PIHADFLIVFSTVPGYYSWRNTTRGSW 771
           P+  D +  +STV GY S+RN T+GSW
Sbjct: 208 PVLQDVIFAYSTVEGYASFRN-TQGSW 233


>SB_19622| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 862

 Score = 32.7 bits (71), Expect = 0.39
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +1

Query: 691 PIHADFLIVFSTVPGYYSWRNTTRGSW 771
           P+  D +  +STV GY S+RN T+GSW
Sbjct: 774 PVLQDVIFAYSTVEGYASFRN-TQGSW 799


>SB_11317| Best HMM Match : Trypsin (HMM E-Value=3e-08)
          Length = 153

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 668 EPSVSVLDNVIPPSNLSPWQA*IKNSFGFP 579
           +PS  ++     P N  PWQA ++++ GFP
Sbjct: 19  KPSTRIVGGTAAPKNAWPWQAQLRSASGFP 48


>SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24)
          Length = 1366

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 45  RVQLFARLLRFVIFKMADEEKKNNGSGTEQRKNGNEDEG 161
           +  LF+  L+ + F M D+E +N  S   QRK  ++DEG
Sbjct: 138 KASLFSDSLKKIDFDM-DKELENENSNKNQRKRSSDDEG 175


>SB_40367| Best HMM Match : ECH (HMM E-Value=3.3)
          Length = 231

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 17/78 (21%), Positives = 33/78 (42%)
 Frame = -3

Query: 243 CYSNEHIFRQAFSHNVALVKIHDCPMRRLRLRCRFSFVLFQSHCFSFLHQPF*KSRTLTI 64
           C  N+ +  +       +V++HD  M  +    RFS    Q    + +++ F   + L++
Sbjct: 66  CCPNKELCTRWRKQPSIIVRVHDLLMAPVTANSRFSIGTVQGKFLTIMNRAFSARKRLSV 125

Query: 63  VQIIAHDLSK*NGVFNLR 10
                 D+S  +G F  R
Sbjct: 126 ANFAFGDVSPKSGSFTFR 143


>SB_56231| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 383

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 96  DEEKKNNGSGTEQRKNGNEDEGDAWGSHG 182
           D+++ ++G   E    GN+D+ D WG  G
Sbjct: 267 DDDRGDDGDDDEDDDRGNDDDEDDWGGGG 295


>SB_43284| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 519

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 96  DEEKKNNGSGTEQRKNGNEDEGDAWGSHGSSQG 194
           D +   +G G      G++D+GD  GS+GS  G
Sbjct: 146 DGDGDGDGDGGGSDDGGDDDDGDGGGSNGSGGG 178


>SB_55277| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 359

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +2

Query: 647 PTLKQMVLRLHPTESQFMLTF*LCSQRYQVI 739
           P L Q VL+L P+E     T  LC   Y VI
Sbjct: 256 PELAQQVLKLPPSEGMSRFTLGLCMMCYAVI 286


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,498,524
Number of Sequences: 59808
Number of extensions: 550177
Number of successful extensions: 1395
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1388
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2395401800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)