Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0393
         (845 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    24   1.5  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   3.5  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   6.2  

>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +3

Query: 186 SQGRRYAKMPVERYAHYYNMNHNIVVWRSFSIMNILKF 299
           S+ RR A +    Y H  N   ++  WR  + + IL++
Sbjct: 47  SEERRQAAIQSGEYDHTKNYPFDVDQWRDKTFVTILRY 84



 Score = 22.2 bits (45), Expect = 6.2
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +3

Query: 96  DEEKKNNGSGTEQRKNGNEDE 158
           D  +KNN      +KN N+++
Sbjct: 431 DNNQKNNKKNANNQKNNNQND 451


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = +3

Query: 186 SQGRRYAKMPVERYAHYYNMNHNIVVWRSFSIMNILKF 299
           S  RR A M    Y H  N   ++  WR  + + + ++
Sbjct: 50  SDERRQAAMQSGEYDHTKNYPFDVDQWRGMTFVTVPRY 87


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
 Frame = +3

Query: 93  ADEEKKNNGSGTEQRKNGNEDEGDAWG-SHGSSQGRRYAKMPVERYAHY 236
           A     NN +      NG  D G+  G S+ ++ G  +    +  Y H+
Sbjct: 237 ASNNNNNN-NNNNNNNNGANDNGNGNGASNNNNNGDMFCHTGLGHYGHH 284


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 242,110
Number of Sequences: 438
Number of extensions: 5326
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)