Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0393
(845 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g20910.1 68416.m02643 CCAAT-binding transcription factor (CBF... 32 0.55
At2g29670.1 68415.m03606 expressed protein 32 0.55
At3g07000.1 68416.m00831 DC1 domain-containing protein contains ... 30 2.2
At3g06990.1 68416.m00830 DC1 domain-containing protein contains ... 29 2.9
At5g55530.3 68418.m06918 C2 domain-containing protein low simila... 29 3.9
At5g55530.2 68418.m06917 C2 domain-containing protein low simila... 29 3.9
At5g55530.1 68418.m06916 C2 domain-containing protein low simila... 29 3.9
At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing ... 29 3.9
At2g46080.1 68415.m05732 expressed protein 29 3.9
At1g58242.1 68414.m06622 hypothetical protein 29 3.9
At3g10000.1 68416.m01200 DNA-binding protein-related similar to ... 28 6.8
At5g08630.1 68418.m01026 DDT domain-containing protein low simil... 28 9.0
At4g13350.2 68417.m02088 human Rev interacting-like protein-rela... 28 9.0
At4g13350.1 68417.m02087 human Rev interacting-like protein-rela... 28 9.0
At3g19900.1 68416.m02520 expressed protein 28 9.0
At3g10240.1 68416.m01225 F-box protein-related contains weak Pfa... 28 9.0
At2g46560.1 68415.m05808 transducin family protein / WD-40 repea... 28 9.0
At1g65660.1 68414.m07450 zinc knuckle (CCHC-type) family protein... 28 9.0
>At3g20910.1 68416.m02643 CCAAT-binding transcription factor
(CBF-B/NF-YA) family protein contains Pfam profile:
PF02045 CCAAT-binding transcription factor (CBF-B/NF-YA)
subunit B
Length = 303
Score = 31.9 bits (69), Expect = 0.55
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +3
Query: 102 EKKNNGSGTEQRKNGNEDEGDAW-GSHGSSQG 194
E+K+NG T+ + N D+G+AW G + + QG
Sbjct: 235 EEKSNGHVTQSPSSSNSDQGEAWNGDYRTPQG 266
>At2g29670.1 68415.m03606 expressed protein
Length = 536
Score = 31.9 bits (69), Expect = 0.55
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = -2
Query: 793 PQRRLHKPKSHELCFSKSNNLVPLRTQS 710
P +LH+PKS EL S S++ P++TQS
Sbjct: 69 PSTKLHRPKSCELWKSSSSSSRPIKTQS 96
>At3g07000.1 68416.m00831 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 574
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -2
Query: 829 NIXLEVP*FXIPPQRRLHKPKSHELCFS 746
N ++V + PPQR +++PKSHE F+
Sbjct: 110 NFSIDVNCWRHPPQRTIYQPKSHEHTFT 137
>At3g06990.1 68416.m00830 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 539
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -2
Query: 829 NIXLEVP*FXIPPQRRLHKPKSHELCFS 746
N ++V + PPQR +++PKSHE F+
Sbjct: 111 NFSVDVNCWRHPPQRTIYQPKSHEHTFT 138
>At5g55530.3 68418.m06918 C2 domain-containing protein low
similarity to cold-regulated gene SRC2 [Glycine max]
GI:2055230; contains Pfam profile PF00168: C2 domain
Length = 405
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +3
Query: 84 FKMADEEKKNNGSGTEQRKNGNEDEG-DAWGSHGSSQGRRYAKMPVERYAHYYNMNHNIV 260
FK+ + E +N+ S + +GN+ G ++ G S GR+ +E Y H HNI
Sbjct: 11 FKIGESENENSNS---VQSSGNQSNGINSNGKDSKSCGRQDLVGALEVYVHQARDIHNIC 67
Query: 261 VW 266
++
Sbjct: 68 IY 69
>At5g55530.2 68418.m06917 C2 domain-containing protein low
similarity to cold-regulated gene SRC2 [Glycine max]
GI:2055230; contains Pfam profile PF00168: C2 domain
Length = 405
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +3
Query: 84 FKMADEEKKNNGSGTEQRKNGNEDEG-DAWGSHGSSQGRRYAKMPVERYAHYYNMNHNIV 260
FK+ + E +N+ S + +GN+ G ++ G S GR+ +E Y H HNI
Sbjct: 11 FKIGESENENSNS---VQSSGNQSNGINSNGKDSKSCGRQDLVGALEVYVHQARDIHNIC 67
Query: 261 VW 266
++
Sbjct: 68 IY 69
>At5g55530.1 68418.m06916 C2 domain-containing protein low
similarity to cold-regulated gene SRC2 [Glycine max]
GI:2055230; contains Pfam profile PF00168: C2 domain
Length = 405
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +3
Query: 84 FKMADEEKKNNGSGTEQRKNGNEDEG-DAWGSHGSSQGRRYAKMPVERYAHYYNMNHNIV 260
FK+ + E +N+ S + +GN+ G ++ G S GR+ +E Y H HNI
Sbjct: 11 FKIGESENENSNS---VQSSGNQSNGINSNGKDSKSCGRQDLVGALEVYVHQARDIHNIC 67
Query: 261 VW 266
++
Sbjct: 68 IY 69
>At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing
protein similar to SP|P42731 Polyadenylate-binding
protein 2 (Poly(A) binding protein 2) (PABP 2)
{Arabidopsis thaliana}; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 423
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = -1
Query: 677 EDEEPSVSVLDNVIPPSNLSPWQA*IKNSFGFPARVGHLSAVK 549
EDE P + V+ +NLSP Q I + FGF VG + +V+
Sbjct: 116 EDETPPADFAEEVLFVANLSP-QTKILDIFGFCQDVGEVVSVR 157
>At2g46080.1 68415.m05732 expressed protein
Length = 347
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +2
Query: 326 NVDSDSLSKVLRGLGFSVTVLHNLRAEDINRYIQQISEMD 445
N S L+++ +G F VLHNL+++ +Y+Q S +D
Sbjct: 112 NAFSSELTRLNQGDLFLKCVLHNLQSDSGEKYLQARSSLD 151
>At1g58242.1 68414.m06622 hypothetical protein
Length = 91
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/19 (57%), Positives = 16/19 (84%), Gaps = 2/19 (10%)
Frame = +2
Query: 182 IFTRATL--CENACRKICS 232
+F +ATL CENAC+K+C+
Sbjct: 45 VFKKATLPLCENACKKLCN 63
>At3g10000.1 68416.m01200 DNA-binding protein-related similar to
GT-2 factor [Arabidopsis thaliana GI:416490
Length = 496
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +3
Query: 90 MADEEKKNNGS-GTEQRKNGNEDEGDAWGSHGSSQGRRYAKMPV 218
MAD E + G+ G +K N+ + W SHG + R M +
Sbjct: 380 MADNEFADEGNKGKMDKKQMNKKRKEKWSSHGGNHPRTKENMMI 423
>At5g08630.1 68418.m01026 DDT domain-containing protein low
similarity to SP|Q9NRL2 Bromodomain adjacent to zinc
finger domain protein 1A (ATP-utilizing chromatin
assembly and remodeling factor 1) (ATP-dependent
chromatin remodelling protein) (Williams syndrome
transcription factor-related chromatin remodeling factor
180) {Homo sapiens}; contains Pfam profile PF02791: DDT
domain
Length = 723
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +3
Query: 96 DEEKKNNGSGTEQRKNGNEDEGDAWGSHGSSQGRRYAKMPVER 224
DEE+K ++ K+ +EDE + G Q R+Y + +E+
Sbjct: 558 DEEEKGFSVKKQEVKSASEDEKGTFERRGPEQRRQYYEREMEK 600
>At4g13350.2 68417.m02088 human Rev interacting-like protein-related
/ hRIP protein-related similar to SP|P52594
Nucleoporin-like protein RIP (HIV-1 Rev-binding protein)
(Rev interacting protein) (Rev/Rex activation
domain-binding protein) {Homo sapiens}; contains Pfam
profile PF01412: Putative GTPase activating protein for
Arf
Length = 602
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -1
Query: 677 EDEEPSVSVLDNVIPPSNLSPWQA*IKNSFGFPAR-VGHLSAV 552
E+ PS++ L +PPS + P Q + N F P++ H SA+
Sbjct: 501 ENMFPSMAPLQGALPPSGMMPSQG-VHNQFNIPSQGSAHPSAM 542
>At4g13350.1 68417.m02087 human Rev interacting-like protein-related
/ hRIP protein-related similar to SP|P52594
Nucleoporin-like protein RIP (HIV-1 Rev-binding protein)
(Rev interacting protein) (Rev/Rex activation
domain-binding protein) {Homo sapiens}; contains Pfam
profile PF01412: Putative GTPase activating protein for
Arf
Length = 602
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -1
Query: 677 EDEEPSVSVLDNVIPPSNLSPWQA*IKNSFGFPAR-VGHLSAV 552
E+ PS++ L +PPS + P Q + N F P++ H SA+
Sbjct: 501 ENMFPSMAPLQGALPPSGMMPSQG-VHNQFNIPSQGSAHPSAM 542
>At3g19900.1 68416.m02520 expressed protein
Length = 222
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 279 LKMIAIPRYCGSCYSNEHIFRQAFSHNVAL 190
+ ++ RYCG C+S R AFSH++ L
Sbjct: 25 ISKVSCSRYCGPCFSG----RLAFSHSLCL 50
>At3g10240.1 68416.m01225 F-box protein-related contains weak
Pfam:PF00646 F-box domain
Length = 389
Score = 27.9 bits (59), Expect = 9.0
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +3
Query: 723 NGTRLLLLEKHNSW 764
NG RL +LEKHN W
Sbjct: 284 NGIRLWILEKHNKW 297
>At2g46560.1 68415.m05808 transducin family protein / WD-40 repeat
family protein similar to CPY (GI:3096961) {Chironomus
thummi}; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies, 3 weak)|9780477|gb|BE522499.1|BE522499
Length = 2471
Score = 27.9 bits (59), Expect = 9.0
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Frame = +2
Query: 344 LSKVLRGLGFSVTVLHNLRAEDINRYIQQISEMDHTDNDCLLVAVLSHGELGMLYPKTLI 523
LS RGL +++ HN+ E+ + + + HTD D L + LS L K+L+
Sbjct: 1598 LSAYNRGL---LSMGHNIFQENSSSGLSD--DKSHTDEDLLQYSALSKLILKATDEKSLV 1652
Query: 524 INQII--CGITSL 556
+++II C +T L
Sbjct: 1653 LSRIIAACSVTCL 1665
>At1g65660.1 68414.m07450 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 535
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 99 EEKKNNGSGTEQRKNGNEDEGD 164
EEK NN G + +G EDE D
Sbjct: 180 EEKNNNEKGDDANSDGEEDEDD 201
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,528,354
Number of Sequences: 28952
Number of extensions: 386362
Number of successful extensions: 1093
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1960634400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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