Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0392
         (709 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    26   0.26 
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    25   0.80 
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    24   1.1  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    24   1.1  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    24   1.1  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    24   1.1  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    24   1.1  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           24   1.1  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    24   1.1  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    22   4.3  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   7.4  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    21   9.8  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   9.8  

>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 26.2 bits (55), Expect = 0.26
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +2

Query: 539 SKSSPKSEPIQKPEKSLSPVRNSVNI 616
           +KSSP+S P+Q  + SLSPV   + I
Sbjct: 225 TKSSPRSSPVQS-DVSLSPVHEPLLI 249


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 24.6 bits (51), Expect = 0.80
 Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 4/117 (3%)
 Frame = +3

Query: 183 ST*THPSKIVHAFKTESATTSAFRVESLNTGVEMSCISMSESLSNLSAPNKKRRSWDLET 362
           +T THPS       + S+T  A   +    G          + SN +A      +  L  
Sbjct: 90  NTQTHPSASCKYADSTSSTGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSV 149

Query: 363 AKVKWSSMAMELKQKNVSK----TSSLNCVNRVNNSRAVSKKPSQVSPPRARSWLQK 521
           +       A     +N+S     TSS +   +   +   SK     +PP+   W+++
Sbjct: 150 STSPPGKPATSTTSQNLSSPASSTSSTSSTEKAGTNNNNSKSSQSSNPPQIYPWMKR 206


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 4/117 (3%)
 Frame = +3

Query: 183 ST*THPSKIVHAFKTESATTSAFRVESLNTGVEMSCISMSESLSNLSAPNKKRRSWDLET 362
           +T THPS       + S+T  A   +    G          + SN +A      +  L  
Sbjct: 90  NTQTHPSASCKYADSTSSTGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSV 149

Query: 363 AKVKWSSMAMELKQKNVSK----TSSLNCVNRVNNSRAVSKKPSQVSPPRARSWLQK 521
           +       A     +N+S     TSS +   +   +   SK     +PP+   W+++
Sbjct: 150 STSPPGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKR 206


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 4/117 (3%)
 Frame = +3

Query: 183 ST*THPSKIVHAFKTESATTSAFRVESLNTGVEMSCISMSESLSNLSAPNKKRRSWDLET 362
           +T THPS       + S+T  A   +    G          + SN +A      +  L  
Sbjct: 90  NTQTHPSASCKYADSTSSTGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSV 149

Query: 363 AKVKWSSMAMELKQKNVSK----TSSLNCVNRVNNSRAVSKKPSQVSPPRARSWLQK 521
           +       A     +N+S     TSS +   +   +   SK     +PP+   W+++
Sbjct: 150 STSPPGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKR 206


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 4/117 (3%)
 Frame = +3

Query: 183 ST*THPSKIVHAFKTESATTSAFRVESLNTGVEMSCISMSESLSNLSAPNKKRRSWDLET 362
           +T THPS       + S+T  A   +    G          + SN +A      +  L  
Sbjct: 90  NTQTHPSASCKYADSTSSTGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSV 149

Query: 363 AKVKWSSMAMELKQKNVSK----TSSLNCVNRVNNSRAVSKKPSQVSPPRARSWLQK 521
           +       A     +N+S     TSS +   +   +   SK     +PP+   W+++
Sbjct: 150 STSPPGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKR 206


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 4/117 (3%)
 Frame = +3

Query: 183 ST*THPSKIVHAFKTESATTSAFRVESLNTGVEMSCISMSESLSNLSAPNKKRRSWDLET 362
           +T THPS       + S+T  A   +    G          + SN +A      +  L  
Sbjct: 90  NTQTHPSASCKYADSTSSTGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSV 149

Query: 363 AKVKWSSMAMELKQKNVSK----TSSLNCVNRVNNSRAVSKKPSQVSPPRARSWLQK 521
           +       A     +N+S     TSS +   +   +   SK     +PP+   W+++
Sbjct: 150 STSPPGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKR 206


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 4/117 (3%)
 Frame = +3

Query: 183 ST*THPSKIVHAFKTESATTSAFRVESLNTGVEMSCISMSESLSNLSAPNKKRRSWDLET 362
           +T THPS       + S+T  A   +    G          + SN +A      +  L  
Sbjct: 46  NTQTHPSASCKYADSTSSTGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSV 105

Query: 363 AKVKWSSMAMELKQKNVSK----TSSLNCVNRVNNSRAVSKKPSQVSPPRARSWLQK 521
           +       A     +N+S     TSS +   +   +   SK     +PP+   W+++
Sbjct: 106 STSPPGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKR 162


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 4/117 (3%)
 Frame = +3

Query: 183 ST*THPSKIVHAFKTESATTSAFRVESLNTGVEMSCISMSESLSNLSAPNKKRRSWDLET 362
           +T THPS       + S+T  A   +    G          + SN +A      +  L  
Sbjct: 90  NTQTHPSASCKYADSTSSTGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSV 149

Query: 363 AKVKWSSMAMELKQKNVSK----TSSLNCVNRVNNSRAVSKKPSQVSPPRARSWLQK 521
           +       A     +N+S     TSS +   +   +   SK     +PP+   W+++
Sbjct: 150 STSPPGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKR 206


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 4/117 (3%)
 Frame = +3

Query: 183 ST*THPSKIVHAFKTESATTSAFRVESLNTGVEMSCISMSESLSNLSAPNKKRRSWDLET 362
           +T THPS       + S+T  A   +    G          + SN +A      +  L  
Sbjct: 90  NTQTHPSASCKYADSTSSTGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSV 149

Query: 363 AKVKWSSMAMELKQKNVSK----TSSLNCVNRVNNSRAVSKKPSQVSPPRARSWLQK 521
           +       A     +N+S     TSS +   +   +   SK     +PP+   W+++
Sbjct: 150 STSPPGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKR 206


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 6/23 (26%), Positives = 14/23 (60%)
 Frame = +3

Query: 444 RVNNSRAVSKKPSQVSPPRARSW 512
           ++NN+  VS    ++  P+ ++W
Sbjct: 87  KLNNNNVVSSTNQEIRGPKRKTW 109


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 16/55 (29%), Positives = 20/55 (36%), Gaps = 5/55 (9%)
 Frame = -1

Query: 517 CNHDLARGGETC-DGFLDTALELLTLFT----QFRLDVFDTFFCFNSIAMDDHLT 368
           C       G TC DG           FT    Q R+++ D+  C N     DH T
Sbjct: 27  CTETSCMNGGTCIDGINSYICTCKPGFTGSNCQNRINLCDSSPCLNGATCQDHTT 81


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis
          triggering hormone receptorisoform B protein.
          Length = 451

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 71 SSTFLSEPIIKFNLAT 24
          SS   S P+I+FN++T
Sbjct: 18 SSALNSTPLIEFNIST 33


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis
          triggering hormone receptorisoform A protein.
          Length = 434

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 71 SSTFLSEPIIKFNLAT 24
          SS   S P+I+FN++T
Sbjct: 18 SSALNSTPLIEFNIST 33


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,129
Number of Sequences: 336
Number of extensions: 3101
Number of successful extensions: 16
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18738900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)