Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0392
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    31   0.21 
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        28   1.5  
SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces ...    27   2.0  
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    27   2.6  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           27   2.6  
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    26   4.6  
SPBC1734.05c |spf31||DNAJ protein Spf31|Schizosaccharomyces pomb...    26   4.6  

>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +1

Query: 76  FPDLPSAQDGPPSLSSKSFTGSLNDIHTDSLKESQIVP 189
           F   PSA + P SLSSK+  G   +   D+L+ S +VP
Sbjct: 2   FVGSPSAIEKPLSLSSKTKVGDETEFTEDALRGSSLVP 39


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = -1

Query: 406 FCFNSIAMDDHLTLAVSKSQLLRFLFGALKFDNDSLIEMQLISTP 272
           FC + + + DH + ++  + ++RF  G L  D  + I  Q+   P
Sbjct: 803 FCMSFLTLLDHTSESLLYNHVVRFTLGELNRDQQNAILKQIPKVP 847


>SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 425

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +1

Query: 73  PFPDLPSAQDGPPSLSSKSFTGSLNDIHTDSLKESQIVPKLTRQRSYTLLKPSP 234
           P P LPS      +L S+S TG      ++  K+  ++ K+    + ++   SP
Sbjct: 225 PIPSLPSTPSSYQNLPSQSLTGESLPTVSNQEKDEGVIEKVAVNNTPSVSSKSP 278


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 348 WDLETAKVKWSSMAMELKQKNVSKTSSLNCVNRVNNSR 461
           WD++ AK       +++ Q  VS TS L  + R+N+ +
Sbjct: 542 WDVQAAKDVDCKSVVDISQLRVSSTSLLQQLYRINSRK 579


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +1

Query: 91  SAQDGP--PSLSSKSFTGSLNDIHTDSLKESQIVPKLTRQRSYTLLKPS 231
           S+QDG   P     S   S+ DIH+ + K  ++  K       TLLK S
Sbjct: 12  SSQDGSKTPETEYDSHVDSIEDIHSLASKRKKLNEKKENLEDLTLLKTS 60


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +3

Query: 225 TESATTSAFRVESLNTGV-EMSCISMSESLSNLSAPNKKRRS 347
           +ES+  S     +LNT + ++     S + SNLS+P+ KR+S
Sbjct: 374 SESSAVSLSDTTNLNTPISDIPSPGSSTTCSNLSSPHIKRKS 415


>SPBC1734.05c |spf31||DNAJ protein Spf31|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 209

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/56 (23%), Positives = 29/56 (51%)
 Frame = -1

Query: 508 DLARGGETCDGFLDTALELLTLFTQFRLDVFDTFFCFNSIAMDDHLTLAVSKSQLL 341
           D+A+  +  +G L+   E+  + + F+L+ +D       +++DD   L   KS ++
Sbjct: 3   DVAKFLDRVEGSLNRGREIDRILSSFKLNAYDVLDILPGMSVDDIRNLYRKKSLMI 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,733,487
Number of Sequences: 5004
Number of extensions: 54174
Number of successful extensions: 172
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)