Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0392
(709 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0092 + 16546204-16546693,16546958-16547028,16547145-165472... 31 0.90
01_06_0924 - 33058194-33058697,33058798-33060147,33060234-330603... 30 2.1
11_01_0047 + 358370-360107,360713-361353 28 6.3
10_07_0055 - 12424320-12424899,12424978-12425160,12425810-124259... 28 6.3
09_06_0001 + 20114108-20115686,20115813-20115928,20116416-201173... 28 6.3
03_01_0617 + 4532651-4532893,4534713-4534939,4535077-4535150,453... 28 6.3
08_02_0975 + 23205590-23205733,23206813-23206894,23207017-232071... 28 8.4
06_02_0007 - 10533689-10534565,10535054-10535946 28 8.4
03_05_0807 + 27849637-27849823,27850002-27850294,27850736-278509... 28 8.4
>06_03_0092 + 16546204-16546693,16546958-16547028,16547145-16547221,
16547322-16547469,16550080-16550148,16550348-16550509,
16550625-16550785,16551240-16551324,16552068-16552144,
16552234-16552441,16555844-16555921,16556463-16556591,
16556665-16556808,16556893-16557038,16557137-16557293,
16557391-16557449,16557582-16557741,16557849-16557998,
16558093-16558229,16558325-16558471,16558556-16558657,
16558742-16558799,16558895-16558996,16559729-16559766,
16559868-16559994,16560075-16560245,16560334-16560465,
16560577-16560686,16560866-16560926,16561031-16561208,
16561293-16561498,16561590-16561709,16561903-16562001,
16562152-16562370,16562701-16562840,16563175-16563286,
16563375-16563425,16563509-16563589,16563683-16563853,
16563934-16564089,16564174-16564380,16565145-16565215,
16565315-16565414,16565783-16565839,16566156-16566212,
16566308-16566388,16566467-16566606,16566641-16566764
Length = 2041
Score = 31.1 bits (67), Expect = 0.90
Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 3/105 (2%)
Frame = +3
Query: 225 TESATTSAFRVESLNTGVEMS---CISMSESLSNLSAPNKKRRSWDLETAKVKWSSMAME 395
TE + VE L T ++ + + S N++++ +E VK
Sbjct: 1512 TEKVDSLTAEVEELKTSLQSEKQRADDLEKKRSEEQQANEEKQK-KMEETDVKMRQFQEY 1570
Query: 396 LKQKNVSKTSSLNCVNRVNNSRAVSKKPSQVSPPRARSWLQKDLE 530
L++ K +++ N+V +AVS PS++ R++S LQ++ E
Sbjct: 1571 LRRLE-EKLANVESENKVLRQQAVSMAPSKILSGRSKSILQRNAE 1614
>01_06_0924 -
33058194-33058697,33058798-33060147,33060234-33060303,
33060918-33060976
Length = 660
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 276 VEMSCISMSESLSNLSAPNKKRRSWDLETAKVKWSSMAMELKQKNVSK 419
+E C+SM + + L P RRSW L T K ++ + + + SK
Sbjct: 616 LEKECMSMKQEIRRLGKP---RRSWSLLTRKCRFGTKVQQAQPTMSSK 660
>11_01_0047 + 358370-360107,360713-361353
Length = 792
Score = 28.3 bits (60), Expect = 6.3
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Frame = +3
Query: 258 ESLNTGVEMSCISMSESLSNLSAPNKKRRSWDLETAKVKWSSMAMELKQKNVSKTSSLNC 437
ESL+ ++ + ++ + N + PNK DL+T + +++ E+ + T+SL
Sbjct: 269 ESLSGLQKLQVVDLAGNRLNGTIPNKLGSLADLKTLDLSGNALTGEIPASLSNLTTSLQA 328
Query: 438 VNRVNN--SRAVSKKPSQVSPPRA 503
N NN S AV +Q P A
Sbjct: 329 FNVSNNNLSGAVPASLAQKFGPSA 352
>10_07_0055 -
12424320-12424899,12424978-12425160,12425810-12425958,
12426339-12426518,12426610-12426729,12427240-12427383,
12427613-12427777,12427879-12428184,12428258-12428621,
12428746-12429074
Length = 839
Score = 28.3 bits (60), Expect = 6.3
Identities = 20/95 (21%), Positives = 40/95 (42%)
Frame = +3
Query: 303 ESLSNLSAPNKKRRSWDLETAKVKWSSMAMELKQKNVSKTSSLNCVNRVNNSRAVSKKPS 482
E L +P+KKR+ D + +S + +V KT + + +KKP+
Sbjct: 685 EELLTSRSPSKKRKQKDKTDVTTEDASTNKQ-DLSHVGKTKRIKSEKTTCEKESSNKKPT 743
Query: 483 QVSPPRARSWLQKDLEE*ALNLRLNQNLFKNQKNH 587
+ ++L+ + + ++ FK QK+H
Sbjct: 744 NEDSGTSMAFLKNSAKRKSPGFLSDKPSFKRQKHH 778
>09_06_0001 +
20114108-20115686,20115813-20115928,20116416-20117394,
20118820-20119082
Length = 978
Score = 28.3 bits (60), Expect = 6.3
Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +3
Query: 303 ESLSNLSAPNKKRRSWDLETAKVKWSSMAMELKQKNVSKTSSLNCV-NRVNNSRAVSKKP 479
++ + P +KRR + ++VK ++ K SK S++ V R+N + ++KP
Sbjct: 614 DTFETIQDPEEKRRVLEKFLSRVKTDKDKLK-KDIQKSKFLSIDEVFKRLNEQKKKNEKP 672
Query: 480 SQVSPPRARSWLQKDLEE 533
+S + +++DLEE
Sbjct: 673 DLISLFEDQKIMKQDLEE 690
>03_01_0617 +
4532651-4532893,4534713-4534939,4535077-4535150,
4535753-4535809,4535940-4536280,4536979-4537047,
4537152-4537219,4537404-4539569,4540101-4540178,
4540326-4540437,4540722-4540772,4540886-4540936
Length = 1178
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +3
Query: 330 NKKRRSWDLETAKVKWSSMAMELKQKNVSKTSSLNCVNRVNNSRAVSKKPSQVSP 494
N +R +W + K + A+ K+VSK N V + N S + + P Q P
Sbjct: 183 NMRRMNWKQKKEFYKKNPAAVIAPTKSVSKVKLSNSVPKANFSTSPALSPEQPGP 237
>08_02_0975 +
23205590-23205733,23206813-23206894,23207017-23207127,
23207212-23208006,23208338-23208704,23209219-23209300,
23209477-23209532,23209888-23209942
Length = 563
Score = 27.9 bits (59), Expect = 8.4
Identities = 19/104 (18%), Positives = 42/104 (40%), Gaps = 2/104 (1%)
Frame = +3
Query: 216 AFKTESATTSAFRVESLNTGVEMSCISMSE--SLSNLSAPNKKRRSWDLETAKVKWSSMA 389
+F + +ES + +E+ + M + +L+ S + R S T ++W
Sbjct: 422 SFSRSLSVQQVKELESCFSKLEIRDVQMDDRVTLTRWSKKHVTRGSEKNSTNIIEWKKKT 481
Query: 390 MELKQKNVSKTSSLNCVNRVNNSRAVSKKPSQVSPPRARSWLQK 521
+E K T + C++++ A + +A + +QK
Sbjct: 482 VESKSSAWEVTETAKCISKIEGEEAKMTAWENLQKAKAEAAIQK 525
>06_02_0007 - 10533689-10534565,10535054-10535946
Length = 589
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 524 PGRMSSKSSPKSEPIQKPEKSLSPVRNSVNI 616
PGR + S P E +QK +KS S+++
Sbjct: 42 PGRSAESSKPNPEVVQKEQKSTQHQNESIDL 72
>03_05_0807 +
27849637-27849823,27850002-27850294,27850736-27850973,
27851075-27851410,27851496-27851581,27851678-27851785,
27851878-27852185,27852265-27852528,27852610-27853381
Length = 863
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 43 IIGSDKNVEEPFPDLPSAQDGPPSLS 120
I+GS+ N+E+ DLPS G L+
Sbjct: 69 IVGSEANLEQGLTDLPSVSQGESKLT 94
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,133,020
Number of Sequences: 37544
Number of extensions: 324035
Number of successful extensions: 993
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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