Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0392
(709 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11898| Best HMM Match : DMP1 (HMM E-Value=1.6) 31 0.69
SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091) 31 1.2
SB_39161| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_26162| Best HMM Match : HMG_box (HMM E-Value=1.5e-31) 29 4.9
SB_11348| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_18585| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_40775| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_3501| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_43483| Best HMM Match : RVT_1 (HMM E-Value=9.4e-33) 28 8.5
SB_20571| Best HMM Match : RAMP (HMM E-Value=5.3) 28 8.5
>SB_11898| Best HMM Match : DMP1 (HMM E-Value=1.6)
Length = 1705
Score = 31.5 bits (68), Expect = 0.69
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +3
Query: 321 SAPNKKRRSWDLETAKVKWSSMAMELKQKN--VSKTSSLNCVNRVNNSRAVSKKPS 482
S KKR+ +L+ AK+ S M+ K+ +S+T + + N+S +S KPS
Sbjct: 1359 SKKKKKRKDKELQEAKIVLSESGMKTADKDSLLSETQVTSKTQQANSSTHISPKPS 1414
>SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091)
Length = 761
Score = 30.7 bits (66), Expect = 1.2
Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Frame = +3
Query: 222 KTESATTSAFRVESLNTGVEMSCISMSESLSNLSAPNKKRRSWDLETAKVKWSSMAME-- 395
+ ES + + R++ ++ E S ++S + +KKR+ K K S E
Sbjct: 329 RDESTSPESVRMQEVSPSSETSRRTVSGHSAKEDRTSKKRKKARKHKRKRKHSKHKSEKQ 388
Query: 396 -LKQKNVSKTSSLNCVNRVNNSRAVSKKPSQV---SPPRARSW 512
++ ++T +N + SR S+ S++ SP R+RSW
Sbjct: 389 SIENGRPTRTQPGGSLNSSSRSRTKSRSRSRIRSRSPARSRSW 431
>SB_39161| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2103
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 134 VKLLELREGGPSCAEGKSGNGSSTFLSE 51
V++ E R G P C E SGNG+ LS+
Sbjct: 496 VRIREERNGTPDCTENYSGNGTLGALSK 523
>SB_26162| Best HMM Match : HMG_box (HMM E-Value=1.5e-31)
Length = 367
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = -3
Query: 392 HRHGRPLDFSSF*IPTSAFFIWCAQVRQRFAHRNAAHFDSSVQRFYSK 249
HR+ D S P ++F IW +R++FA N ++ + + K
Sbjct: 83 HRYEDEEDDSHVKRPMNSFMIWAKVMRRKFAEENPKLHNAEISKLLGK 130
>SB_11348| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 177
Score = 28.7 bits (61), Expect = 4.9
Identities = 22/100 (22%), Positives = 42/100 (42%), Gaps = 4/100 (4%)
Frame = +3
Query: 159 R*FERVTNST*THPSKIVHAFKTESATTSAFRVESLNTG----VEMSCISMSESLSNLSA 326
R +E++ N T T + H TT+ R + N + + + + L +
Sbjct: 31 RVYEQLHNKTTTTKRAVTHNDSNYKTTTATKRKQQQNNNGYKTEKNNKTTTATKLQQTTT 90
Query: 327 PNKKRRSWDLETAKVKWSSMAMELKQKNVSKTSSLNCVNR 446
K++R + K K + + K+KN KT++ VN+
Sbjct: 91 ATKQQRQQNDNGNKTKTTKRQRQQKEKNNKKTTTATNVNK 130
>SB_18585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 520
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 524 PGRMSSKSSPKSEPIQKPEKSLSPVRNSVNIN 619
P R + SS ++PI KP + L+P++ S+ N
Sbjct: 334 PLRNAGSSSEDNKPIPKPRRMLTPLQGSLESN 365
>SB_40775| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 712
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +3
Query: 516 QKDLEE*ALNLRLNQNLFKNQKNHLV 593
Q+D+E+ L +LNQNL KN K+ V
Sbjct: 453 QQDIEKSQLKGQLNQNLVKNHKDETV 478
>SB_3501| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 185
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Frame = +3
Query: 321 SAPNKKRRSWDLETAKVKWSSMAMELKQKNVSKTSSLNCVNR-VNNSRAVSKKPSQVSP 494
S N R W T +V S + + + + + C+ R NN +++ P + P
Sbjct: 47 SLKNTSNRQWSHSTGRVNTSRIPLTTPSQTAQRFAKQQCIWRDTNNLIKINRVPGNIKP 105
>SB_43483| Best HMM Match : RVT_1 (HMM E-Value=9.4e-33)
Length = 919
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Frame = +3
Query: 321 SAPNKKRRSWDLETAKVKWSSMAMELKQKNVSKTSSLNCVNR-VNNSRAVSKKPSQVSP 494
S N R W T +V S + + + + + C+ R NN +++ P + P
Sbjct: 228 SLKNTTNRQWSHTTGRVNTSRIPLTTPSQTAQRFAKQQCIWRDTNNLIKINRAPGDIKP 286
>SB_20571| Best HMM Match : RAMP (HMM E-Value=5.3)
Length = 361
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +2
Query: 65 LKSRFLICLRHKTDRLLLVLKASRDPLTIYIQIV 166
L SR LICL HKT ++ V + D T+Y +I+
Sbjct: 146 LYSRILICLLHKTVKVATVARVVPDS-TLYSRIL 178
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,020,345
Number of Sequences: 59808
Number of extensions: 386531
Number of successful extensions: 1145
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1144
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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