Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0392
         (709 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024817-3|AAK68524.1|  482|Caenorhabditis elegans Hypothetical ...    31   0.61 
Z73103-9|CAJ43433.1|  719|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z73103-8|CAA97429.1|  721|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AL031627-20|CAA20952.1|  325|Caenorhabditis elegans Hypothetical...    29   2.5  
AL021504-1|CAA16428.3|  325|Caenorhabditis elegans Hypothetical ...    29   2.5  
Z73898-9|CAA98066.2|  913|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U88314-7|AAF99887.2|  294|Caenorhabditis elegans Pharyngeal glan...    29   3.3  
AF016672-8|AAB66117.4|  998|Caenorhabditis elegans Jnk interacti...    29   3.3  
Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical pr...    29   4.3  
AC024849-4|AAL27260.2|  152|Caenorhabditis elegans Hypothetical ...    29   4.3  
AL033514-34|CAA22113.1|  463|Caenorhabditis elegans Hypothetical...    28   7.5  
AL033514-33|CAB54500.1|  480|Caenorhabditis elegans Hypothetical...    28   7.5  
AL022274-2|CAA18358.1|  329|Caenorhabditis elegans Hypothetical ...    28   7.5  
AF160493-1|AAD43348.1|  465|Caenorhabditis elegans DNA-binding p...    28   7.5  
AF160492-1|AAD43347.1|  463|Caenorhabditis elegans DNA-binding p...    28   7.5  
Z77136-1|CAB00880.1|  606|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>AC024817-3|AAK68524.1|  482|Caenorhabditis elegans Hypothetical
           protein Y54G2A.11a protein.
          Length = 482

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +1

Query: 70  EPFPDLPSAQDGPPSLSSKSFTGSLNDIHTDSLKESQ 180
           EP  + P + D   + S KSF+ S +D  +DSL ES+
Sbjct: 41  EPIVEEPPSSDDDDTASEKSFSDSDSDSDSDSLSESE 77


>Z73103-9|CAJ43433.1|  719|Caenorhabditis elegans Hypothetical
           protein C08F8.2b protein.
          Length = 719

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +2

Query: 428 PELREQSQ*FKSCVQETITGFTSAC*IVVAERPGRMSSKSSP-KSEPIQKPEKSLSPVRN 604
           P +RE S+   S +QE +  F S   +   E     SSKSS  K E   K E+     R+
Sbjct: 631 PRVREASKHLDSMIQEGVESFMSLLSVGATESKAAGSSKSSEGKRENPSKSEREKPNKRS 690

Query: 605 SV 610
           S+
Sbjct: 691 SI 692


>Z73103-8|CAA97429.1|  721|Caenorhabditis elegans Hypothetical
           protein C08F8.2a protein.
          Length = 721

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +2

Query: 428 PELREQSQ*FKSCVQETITGFTSAC*IVVAERPGRMSSKSSP-KSEPIQKPEKSLSPVRN 604
           P +RE S+   S +QE +  F S   +   E     SSKSS  K E   K E+     R+
Sbjct: 633 PRVREASKHLDSMIQEGVESFMSLLSVGATESKAAGSSKSSEGKRENPSKSEREKPNKRS 692

Query: 605 SV 610
           S+
Sbjct: 693 SI 694


>Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical
           protein T23F1.5 protein.
          Length = 1262

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = +1

Query: 10  NNDKTVAKLNFIIGSDKNVEEPFPDLPSAQDGPPSLSSKSFTGSLNDIHTDSLKES 177
           N+ KT+  +     SD+  +EP  D+  A D P S       GS      + LK S
Sbjct: 365 NDLKTIRPIYLGSSSDEEDDEPLEDISKATDSPHSSEKSQIPGSPGSQIKNPLKPS 420


>AL031627-20|CAA20952.1|  325|Caenorhabditis elegans Hypothetical
           protein Y102A5C.32 protein.
          Length = 325

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = -2

Query: 198 GEFRYYL*LFQTIC 157
           GEFRYYL LFQ +C
Sbjct: 42  GEFRYYLLLFQVVC 55


>AL021504-1|CAA16428.3|  325|Caenorhabditis elegans Hypothetical
           protein Y61B8B.1 protein.
          Length = 325

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = -2

Query: 198 GEFRYYL*LFQTIC 157
           GEFRYYL LFQ +C
Sbjct: 42  GEFRYYLLLFQVVC 55


>Z73898-9|CAA98066.2|  913|Caenorhabditis elegans Hypothetical
           protein ZK822.1 protein.
          Length = 913

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 7   INNDKTVAKLNFIIGSDKNVEEPF 78
           + N +   K N I+G+D+N+EE F
Sbjct: 591 VENSRRTIKKNAIVGNDRNIEEEF 614


>U88314-7|AAF99887.2|  294|Caenorhabditis elegans Pharyngeal gland
           toxin-relatedprotein 1 protein.
          Length = 294

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +3

Query: 408 NVSKTSSLNCVNRVNNSRAVSKKPSQVS 491
           N + TSS +CV+RVN S  VS  P++ +
Sbjct: 129 NSTSTSSTSCVDRVNPSTGVSDCPARAA 156


>AF016672-8|AAB66117.4|  998|Caenorhabditis elegans Jnk interacting
           protein (scaffoldprotein) protein 1 protein.
          Length = 998

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = +1

Query: 454 IQEL-CPRNHHRFHLRVLDRG 513
           ++EL  P+NHHR H  +LD G
Sbjct: 500 VEELQLPKNHHRLHPEILDNG 520


>Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical protein
            F25C8.3b protein.
          Length = 3175

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/60 (25%), Positives = 28/60 (46%)
 Frame = +3

Query: 312  SNLSAPNKKRRSWDLETAKVKWSSMAMELKQKNVSKTSSLNCVNRVNNSRAVSKKPSQVS 491
            S  S P      WD   +  +WS ++      N  +T S+N +  +N+S  ++ K  ++S
Sbjct: 1280 SKNSKPQTGNSGWDKLLSHRRWSILSNTF---NAQQTGSVNSITEINSSIHLNDKERRIS 1336


>Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical protein
            F25C8.3a protein.
          Length = 3184

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/60 (25%), Positives = 28/60 (46%)
 Frame = +3

Query: 312  SNLSAPNKKRRSWDLETAKVKWSSMAMELKQKNVSKTSSLNCVNRVNNSRAVSKKPSQVS 491
            S  S P      WD   +  +WS ++      N  +T S+N +  +N+S  ++ K  ++S
Sbjct: 1280 SKNSKPQTGNSGWDKLLSHRRWSILSNTF---NAQQTGSVNSITEINSSIHLNDKERRIS 1336


>AC024849-4|AAL27260.2|  152|Caenorhabditis elegans Hypothetical
           protein Y67D8B.5 protein.
          Length = 152

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 8/58 (13%)
 Frame = +1

Query: 61  NVEEPFPDLPSAQDGP-PS-LSSKSFTGSLN------DIHTDSLKESQIVPKLTRQRS 210
           NV EP P +PS   GP PS LS +S   S N      +   D+L+ S+   K+T ++S
Sbjct: 65  NVPEPAPQVPSQAAGPDPSRLSKRSSRQSANKPSESVNPDADTLRSSRKSDKMTNKKS 122


>AL033514-34|CAA22113.1|  463|Caenorhabditis elegans Hypothetical
           protein Y75B8A.35b protein.
          Length = 463

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 21/94 (22%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
 Frame = +3

Query: 309 LSNLSAPNKKRRSWDLETAKVKWSSMAMELKQKNVSKTSSLNCVNRVNNSRAVSKKPSQV 488
           L   S+  K+ R    E +++         K++N  + ++ NCV   NNS+   K+  ++
Sbjct: 240 LGEKSSGEKRTRMTKAEMSRLTEKEKLERKKEQN--RANAKNCVKNRNNSKEELKQTLEM 297

Query: 489 SPPRAR-SWLQKDLEE*ALNLRLNQNLFKNQKNH 587
              + + +  Q +++E  L      N+F  Q N+
Sbjct: 298 LREKVQEAKRQNEMQENGLLAAYETNIFAVQGNN 331


>AL033514-33|CAB54500.1|  480|Caenorhabditis elegans Hypothetical
           protein Y75B8A.35a protein.
          Length = 480

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 21/94 (22%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
 Frame = +3

Query: 309 LSNLSAPNKKRRSWDLETAKVKWSSMAMELKQKNVSKTSSLNCVNRVNNSRAVSKKPSQV 488
           L   S+  K+ R    E +++         K++N  + ++ NCV   NNS+   K+  ++
Sbjct: 257 LGEKSSGEKRTRMTKAEMSRLTEKEKLERKKEQN--RANAKNCVKNRNNSKEELKQTLEM 314

Query: 489 SPPRAR-SWLQKDLEE*ALNLRLNQNLFKNQKNH 587
              + + +  Q +++E  L      N+F  Q N+
Sbjct: 315 LREKVQEAKRQNEMQENGLLAAYETNIFAVQGNN 348


>AL022274-2|CAA18358.1|  329|Caenorhabditis elegans Hypothetical
           protein H24D24.2 protein.
          Length = 329

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -1

Query: 703 IPKLIAGVVEFTGSNILXLLFWETPPSCINVNAIPYRTK 587
           +P +   VV+F    I     W +PPSC N+     RT+
Sbjct: 165 LPHIPFWVVDFKMDEIYEYNVWVSPPSCTNLPGNTSRTR 203


>AF160493-1|AAD43348.1|  465|Caenorhabditis elegans DNA-binding
           protein ZIP-1 protein.
          Length = 465

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 21/94 (22%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
 Frame = +3

Query: 309 LSNLSAPNKKRRSWDLETAKVKWSSMAMELKQKNVSKTSSLNCVNRVNNSRAVSKKPSQV 488
           L   S+  K+ R    E +++         K++N  + ++ NCV   NNS+   K+  ++
Sbjct: 257 LGEKSSGEKRTRMTKAEMSRLTEKEKLERKKEQN--RANAKNCVKNRNNSKEELKQTLEM 314

Query: 489 SPPRAR-SWLQKDLEE*ALNLRLNQNLFKNQKNH 587
              + + +  Q +++E  L      N+F  Q N+
Sbjct: 315 LREKVQEAKRQNEMQENGLLAAYETNIFAVQGNN 348


>AF160492-1|AAD43347.1|  463|Caenorhabditis elegans DNA-binding
           protein ZIP-1 protein.
          Length = 463

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 21/94 (22%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
 Frame = +3

Query: 309 LSNLSAPNKKRRSWDLETAKVKWSSMAMELKQKNVSKTSSLNCVNRVNNSRAVSKKPSQV 488
           L   S+  K+ R    E +++         K++N  + ++ NCV   NNS+   K+  ++
Sbjct: 240 LGEKSSGEKRTRMTKAEMSRLTEKEKLERKKEQN--RANAKNCVKNRNNSKEELKQTLEM 297

Query: 489 SPPRAR-SWLQKDLEE*ALNLRLNQNLFKNQKNH 587
              + + +  Q +++E  L      N+F  Q N+
Sbjct: 298 LREKVQEAKRQNEMQENGLLAAYETNIFAVQGNN 331


>Z77136-1|CAB00880.1|  606|Caenorhabditis elegans Hypothetical
           protein ZC376.1 protein.
          Length = 606

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = -1

Query: 421 VFDTFFCFNSIAMDDHLTLAVSKSQLLRFLFGALKFDNDSLIE 293
           + DT+ C  + +  D L   +S  Q   F FG+ + D D + +
Sbjct: 220 IVDTYLCLQNKSAQDLLHAQLSMQQNSTFYFGSPRVDGDFITD 262


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,114,521
Number of Sequences: 27780
Number of extensions: 299459
Number of successful extensions: 947
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)