Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0392
         (709 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g08730.1 68414.m00969 myosin heavy chain (PCR43) identical to...    33   0.19 
At2g44840.1 68415.m05583 ethylene-responsive element-binding pro...    30   1.7  
At1g60410.1 68414.m06801 F-box family protein contains F-box dom...    30   1.7  
At3g07120.1 68416.m00848 zinc finger (C3HC4-type RING finger) fa...    29   3.0  
At1g11170.1 68414.m01280 expressed protein contains Pfam profile...    28   7.0  
At3g48470.1 68416.m05291 expressed protein                             27   9.2  
At3g05110.1 68416.m00555 hypothetical protein                          27   9.2  

>At1g08730.1 68414.m00969 myosin heavy chain (PCR43) identical to
            myosin heavy chain PCR43 (PIR:T00727) [Arabidopsis
            thaliana]; similar to ESTs gb|R30087 and gb|AA394762
          Length = 1538

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
 Frame = +3

Query: 321  SAPNKKRRSWDLETAKVKWSSMAMELKQKNVSKTSSLNCVNRVNNSRAVSKKPSQVSPPR 500
            S  +KK++   LE  + K   +   L +    K S+L   N+V   +AVS  P++    R
Sbjct: 1017 SLEDKKKK---LEETEKKGQQLQESLTRME-EKCSNLESENKVLRQQAVSMAPNKFLSGR 1072

Query: 501  ARSWLQKDLE--E*ALNLRLNQNLFKNQKNH 587
            +RS LQ+  E    A++ R N +L  +  NH
Sbjct: 1073 SRSILQRGSESGHLAVDARSNLDLHSHSINH 1103


>At2g44840.1 68415.m05583 ethylene-responsive element-binding
           protein, putative
          Length = 226

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +1

Query: 28  AKLNF--IIGSDKNVEEPFPDLPSAQDGPPSLSSKSFTGSLNDIHTDSLKESQIVPKL 195
           AKLNF  +IGS K   EP    P  +   PS+S +  +    + H D  + S +VP+L
Sbjct: 144 AKLNFPHLIGSCKY--EPVRIRPRRRSPEPSVSDQLTSEQKRESHVDDGESSLVVPEL 199


>At1g60410.1 68414.m06801 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 406

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = -1

Query: 391 IAMDDHLTLAVSKSQLLRFLFGALKFDNDSLIEMQLISTPVFKDSTL 251
           +  D   + +VS   + +  F  +KFD DS++E  +  +PV ++ T+
Sbjct: 148 VVFDHPRSKSVSLPSVKKMYFEGVKFDGDSVLETLISHSPVLEELTV 194


>At3g07120.1 68416.m00848 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 Zinc
           finger, C3HC4 type (RING finger)
          Length = 360

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +1

Query: 46  IGSDKNVEEPFPDLPSAQDGPPSLSSK 126
           +GS KN ++  PD+   +DGPPS S K
Sbjct: 148 VGSSKNPDDS-PDISVLEDGPPSRSFK 173


>At1g11170.1 68414.m01280 expressed protein contains Pfam profile
           PF05212: Protein of unknown function (DUF707)
          Length = 438

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = +3

Query: 333 KKRRSWDLETAKVKWSSMAMELKQKNVSKTSSLNCVNRVNN 455
           +++ +W+L+T K +WS  A+E   K +  +SS +   R +N
Sbjct: 367 RRQSTWELQTFKERWSK-AVEEDIKWIDPSSSSSMTKRKSN 406


>At3g48470.1 68416.m05291 expressed protein
          Length = 1017

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +3

Query: 405 KNVSKTSS--LNCVNRVNNSRAVSKKPSQVSPPRARSWLQKDLEE*ALNLRLNQNLF 569
           K VS+T S  LN  NR    R +  KP Q    ++R W  K  +    +   +QN F
Sbjct: 773 KKVSETGSFHLNWANRF--ERELQSKPGQTKKGKSRRWSLKSADRDQNSTDWSQNRF 827


>At3g05110.1 68416.m00555 hypothetical protein
          Length = 372

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/67 (23%), Positives = 31/67 (46%)
 Frame = +3

Query: 225 TESATTSAFRVESLNTGVEMSCISMSESLSNLSAPNKKRRSWDLETAKVKWSSMAMELKQ 404
           +E   T + R+      +E S   +    + L     KR+ +DL+  +++     +ELKQ
Sbjct: 45  SEEICTESERMRKETELIETSLKQLEARENELREVEAKRKFFDLKEKELEEKEKELELKQ 104

Query: 405 KNVSKTS 425
           + V + S
Sbjct: 105 RQVQERS 111


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,171,836
Number of Sequences: 28952
Number of extensions: 277035
Number of successful extensions: 913
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)