Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0391
         (779 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ...    28   1.3  
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    27   3.0  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   3.0  
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    26   5.3  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    25   9.2  

>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 457 FYATHCTSVRALSHYSTQLDCYYYYLFVCILHI 359
           FY   C+S+ AL+  S  +D +      CI+HI
Sbjct: 257 FYVLGCSSLSALNQMSKHVDSFSDVYPTCIIHI 289


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 442 CTSVRALSHYSTQLDCYYYYLFVCILHIW*LCPLDVA 332
           C   +A S++S Q+ C    + VC LHI  LC  D++
Sbjct: 661 CQHCKAFSYFS-QVACSCKSITVCPLHIEYLCKCDLS 696


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
 Frame = -1

Query: 638  LVCSSAPRGTFSTASDFGD--SCDTVYDSS*PLTAWMNIRSSTALFLSSAILCSRRPSCV 465
            +V SS P  T STA +     +  TV +SS P+T+   + SSTA+  SS+IL S  P   
Sbjct: 3413 VVNSSTPI-TSSTALNTSTPITSSTVVNSSTPITSSSVLNSSTAI-ASSSILNSSTPITS 3470

Query: 464  GGIL 453
              +L
Sbjct: 3471 SSVL 3474


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -2

Query: 472 LV*AVFYATHCTSVRALSHYSTQLDCYYYYLFVCILHIW*LCPLDVA 332
           L+ AVFY    +S   LS   + ++ + +Y+    L  W +C L ++
Sbjct: 493 LLPAVFYGAELSSTSFLSTIHSFINNWSHYISASFLSKWIVCALSLS 539


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1260

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 525  EQHRVVSLVRHFVFAAAILCRRYSMRRTAHPSG 427
            E H    ++RHF F  ++ C   S RR+  P G
Sbjct: 1171 EYHGGDGVIRHFEFRRSMHCSILSERRSRAPYG 1203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,803,777
Number of Sequences: 5004
Number of extensions: 50311
Number of successful extensions: 165
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)