Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0391
         (779 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14757| Best HMM Match : DUF468 (HMM E-Value=6.5)                    35   0.085
SB_27418| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_46064| Best HMM Match : PH (HMM E-Value=1.9e-21)                    29   4.2  
SB_5491| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.4  
SB_53798| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  

>SB_14757| Best HMM Match : DUF468 (HMM E-Value=6.5)
          Length = 198

 Score = 34.7 bits (76), Expect = 0.085
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
 Frame = +2

Query: 449 RIEYRLHKMAAANTKWRTRETTRCCSLYS-SRLLTATRSRTQYHSCHQ-SQKPWRTCRGA 622
           +I+ ++H  A  ++  RTR  TR C+  + +R+ T T   TQ H  HQ +       R A
Sbjct: 61  QIDTQMHVHAPRHSNVRTRTKTRKCTWRTKTRICTYTHPDTQIHMAHQDTHMHVHAPRHA 120

Query: 623 RCCRRVNFERVPFT 664
             C R    +  +T
Sbjct: 121 NTCTRTQTRKCTYT 134


>SB_27418| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 86

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 560 SRTQYHSCHQSQKPWRTCRGARCCRRVNFERVPF 661
           +R   H     +  WRTC GA C   + +E +PF
Sbjct: 24  TRKNPHEIRNPEPYWRTCHGAICALEI-YESLPF 56


>SB_46064| Best HMM Match : PH (HMM E-Value=1.9e-21)
          Length = 319

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +2

Query: 521 CSLYSSRLLTATRSRTQYHSC 583
           C+L  SRLLT TR  TQ++ C
Sbjct: 269 CALAKSRLLTYTRLLTQFYGC 289


>SB_5491| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 289

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +1

Query: 463 PTQDGRREHKMADERNNAVLLLIFIQAVN 549
           P +D R+EH++A++R N V+ +    AV+
Sbjct: 27  PERDERKEHRLAEQRANTVVEIFDSHAVD 55


>SB_53798| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 170

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
 Frame = -3

Query: 693 RTLHTGWVXIVKGTRSKLTRLQQRAPR---HVLHGF*LW*QL 577
           R LH G V + +   ++L+ ++ R P+   H++HG+ L+ +L
Sbjct: 11  RKLHLGVVPVARDGDTRLSLVRPRVPQNITHIVHGYKLYLEL 52


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,459,114
Number of Sequences: 59808
Number of extensions: 397586
Number of successful extensions: 908
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)