Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0391
         (779 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g59660.1 68416.m06656 C2 domain-containing protein / GRAM dom...    29   3.5  
At5g19460.1 68418.m02319 MutT/nudix family protein similar to SP...    28   8.0  

>At3g59660.1 68416.m06656 C2 domain-containing protein / GRAM
           domain-containing protein low similarity to GLUT4
           vesicle protein [Rattus norvegicus] GI:4193489; contains
           Pfam profiles PF00168: C2 domain, PF02893: GRAM domain
          Length = 594

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +1

Query: 433 RMCSASHRIPP--TQDGRREHKMADERNNAVLLLIFIQAVNGYEESYTVSQ 579
           RM +  H +PP  T DGR  +K A   N    L    +AVN Y     V +
Sbjct: 308 RMGAGGHGVPPLGTPDGRVRYKFASFWNRNHTLKALQRAVNNYHAMLEVEK 358


>At5g19460.1 68418.m02319 MutT/nudix family protein similar to
           SP|P41888 Thiamine pyrophosphokinase (EC 2.7.6.2) (TPK)
           (Thiamine kinase) {Schizosaccharomyces pombe}; contains
           Pfam profile PF00293: NUDIX domain
          Length = 374

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -2

Query: 751 TIMWSSCFTVDDVVESDAASYSSYRLGXYRE 659
           T+  SS FT DDV+E+  A Y+S  L  + E
Sbjct: 53  TVPISSSFTWDDVIETGRAEYNSSDLTGFFE 83


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,573,909
Number of Sequences: 28952
Number of extensions: 261367
Number of successful extensions: 555
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)