Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0389
         (774 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q82K07 Cluster: Putative RNA polymerase ECF-subfamily s...    35   2.6  
UniRef50_A5GDQ3 Cluster: APHP domain protein; n=1; Geobacter ura...    34   3.4  
UniRef50_UPI0000DA29C7 Cluster: PREDICTED: similar to SPOC domai...    34   4.5  
UniRef50_Q7UQP5 Cluster: Similar to L-sorbosone dehydrogenase; n...    34   4.5  
UniRef50_UPI0000E478F5 Cluster: PREDICTED: similar to plus agglu...    33   7.9  
UniRef50_A7HIT8 Cluster: Putative uncharacterized protein; n=2; ...    33   7.9  

>UniRef50_Q82K07 Cluster: Putative RNA polymerase ECF-subfamily
           sigma factor; n=1; Streptomyces avermitilis|Rep:
           Putative RNA polymerase ECF-subfamily sigma factor -
           Streptomyces avermitilis
          Length = 634

 Score = 34.7 bits (76), Expect = 2.6
 Identities = 28/88 (31%), Positives = 35/88 (39%), Gaps = 9/88 (10%)
 Frame = -2

Query: 248 ASGAKTGWKQCVAGTKSSTSFR------FKTEDEPTYTLVPGNVPRRRRLQTTATNTARP 87
           A+ A  GW   V G     +        F        T  P + PRR     TA +TARP
Sbjct: 338 ATAASAGWSAKVLGVLGKPAVAVTAGATFAAGGVYVVTQTPDHPPRRAVAAPTAASTARP 397

Query: 86  KAIIADRHPS---TNSESGARSVTRSPL 12
            ++     PS   T S S + S TR PL
Sbjct: 398 PSVTRSASPSPSRTTSPSPSPSKTRVPL 425


>UniRef50_A5GDQ3 Cluster: APHP domain protein; n=1; Geobacter
            uraniumreducens Rf4|Rep: APHP domain protein - Geobacter
            uraniumreducens Rf4
          Length = 1951

 Score = 34.3 bits (75), Expect = 3.4
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = +1

Query: 160  VGSSSVLKRKLVEDFVPATHCFQPVLAPEAPSTSRWHAT*LCDVTALICCPWKIVSSV 333
            VGSS+  +R ++ D  P      PV +P   S+     T   D+T  + CP   V ++
Sbjct: 1703 VGSSTTTQRNVIYDTTPPALAINPVQSPITASSVLLSGTRETDLTVTVACPTATVGTI 1760


>UniRef50_UPI0000DA29C7 Cluster: PREDICTED: similar to SPOC domain
           containing 1; n=4; Rattus norvegicus|Rep: PREDICTED:
           similar to SPOC domain containing 1 - Rattus norvegicus
          Length = 749

 Score = 33.9 bits (74), Expect = 4.5
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = +1

Query: 190 LVEDFVPATHCFQPVLAPEAPSTSRWHAT*LCDVTALICCPWKIVSSVPKFSDVI*NVKD 369
           L+E  VP     Q +  P    T+ WH   LCD +  IC   K  + +P FS    N ++
Sbjct: 308 LMEPMVPRECSLQALTTP-LEDTTDWHQHHLCDSSCQICTDQKSSTKLPAFSPAAMNEEE 366

Query: 370 IKVNR 384
             + +
Sbjct: 367 NTIQK 371


>UniRef50_Q7UQP5 Cluster: Similar to L-sorbosone dehydrogenase; n=1;
           Pirellula sp.|Rep: Similar to L-sorbosone dehydrogenase
           - Rhodopirellula baltica
          Length = 1074

 Score = 33.9 bits (74), Expect = 4.5
 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
 Frame = -3

Query: 316 STDSISKL*RHTTTSRATCSLRELQVPRLVGNNASLVQNLQQAFVLKPKTNLHIHWSLEM 137
           S D+++K   H T S     LR   + RL+G+NAS+  + QQA V   K    +H   ++
Sbjct: 556 SDDALTK---HLTASEPDPDLRRWAI-RLLGDNASMTNDQQQALVELAKREADVHVRSQL 611

Query: 136 YLVAV---ASKQLPLIR 95
              A    A   LP++R
Sbjct: 612 ASTAARLHAEPALPILR 628


>UniRef50_UPI0000E478F5 Cluster: PREDICTED: similar to plus
           agglutinin; n=1; Strongylocentrotus purpuratus|Rep:
           PREDICTED: similar to plus agglutinin -
           Strongylocentrotus purpuratus
          Length = 2710

 Score = 33.1 bits (72), Expect = 7.9
 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = -3

Query: 247 LQVP-RLVGNNASLVQNLQQAFVLKPKTNLHIHWSLEMYLVAVASKQLPLIRLDRKLS*L 71
           LQ P +++      V  +QQ +VL  KT L+IH  L M   AV+    P   L   L+  
Sbjct: 337 LQAPGKVIVGGQQTVMPMQQTYVLNTKTPLNIHPKLGMGAPAVSKAPPPQQGLRIMLAPQ 396

Query: 70  IGTPVPTLNQAP 35
            G  + T+  AP
Sbjct: 397 AGGNIQTIGGAP 408


>UniRef50_A7HIT8 Cluster: Putative uncharacterized protein; n=2;
           Anaeromyxobacter|Rep: Putative uncharacterized protein -
           Anaeromyxobacter sp. Fw109-5
          Length = 597

 Score = 33.1 bits (72), Expect = 7.9
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = -2

Query: 146 PGNVPR---RRRLQTTATNTARPKAIIADRHPSTNSESGARSVTRSP 15
           PGN PR   RRRL  +A  + RP  +   R PS  S      +T +P
Sbjct: 7   PGNCPRGDQRRRLSASARRSGRPVGVARRRAPSGRSPGMPNEITFAP 53


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 660,590,547
Number of Sequences: 1657284
Number of extensions: 11832842
Number of successful extensions: 25526
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 24753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25520
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65027411410
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)