Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0389
         (774 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce...    28   1.7  
SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase |Schizo...    26   5.2  
SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar...    26   6.9  
SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces pombe...    25   9.1  

>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +3

Query: 375 SEQKKIVIIRYSMK*KLVSVLWIVHF*LCC 464
           SE +++  +R  M  +++  LWI++F  CC
Sbjct: 69  SELRRLQKLRLKMDLRIIPCLWILYFLSCC 98


>SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -2

Query: 245 SGAKTGWKQCVAGTKSSTSFRFKTEDEPTYTLVPGNVPR 129
           +G KT W+  + G     S +   E E   + V G +PR
Sbjct: 17  NGVKTNWRNLIQGKSGIVSLKGFPEYEQIPSKVAGVIPR 55


>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
           Byr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 154 VYVGSSSVLKRKLVEDFVPATHCFQPVL 237
           VYVGS S L+++++ +     HC  P +
Sbjct: 95  VYVGSDSKLQKQILRELGVLHHCRSPYI 122


>SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 110 TATNTARPKAIIADRHPSTNSESGARSV 27
           T  +T +PK + AD  PS++S++   SV
Sbjct: 134 TDLSTFKPKLLFADSAPSSSSDNPTSSV 161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,793,932
Number of Sequences: 5004
Number of extensions: 51824
Number of successful extensions: 126
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)