Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0389
         (774 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038612-3|AAB92045.2|  432|Caenorhabditis elegans Hypothetical ...    29   3.7  
Z22177-8|CAB76721.1|  136|Caenorhabditis elegans Hypothetical pr...    29   4.9  

>AF038612-3|AAB92045.2|  432|Caenorhabditis elegans Hypothetical
           protein F13B6.3 protein.
          Length = 432

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
 Frame = -2

Query: 215 VAGTKSSTSFRFKTEDEPTYTLVPGNVPRRRRLQTTATN-TARPKAIIADRHPST 54
           V  TKS+    F  ED P  T  P   P+     TTA   T  P      R P+T
Sbjct: 328 VESTKSAYVILFDIEDLPVTTSSPATTPKPTAKPTTAPECTCPPTTFPTTRAPNT 382


>Z22177-8|CAB76721.1|  136|Caenorhabditis elegans Hypothetical
           protein ZK512.9 protein.
          Length = 136

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -3

Query: 610 GGVNLTVFHKYIFTIHN*FILQSPNLKTK 524
           G  N+TVFH      ++  ++Q+PN++TK
Sbjct: 26  GSTNVTVFHNDYTDSYSTSLIQNPNIRTK 54


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,593,009
Number of Sequences: 27780
Number of extensions: 296039
Number of successful extensions: 666
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)