Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0389
         (774 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g28110.1 68415.m03415 exostosin family protein contains 1 tra...    29   4.5  
At1g01300.1 68414.m00046 aspartyl protease family protein contai...    28   6.0  

>At2g28110.1 68415.m03415 exostosin family protein contains 1
           transmembrane domain; similar to
           pectin-glucuronyltransferase (GI:23821292) [Nicotiana
           plumbaginifolia]; similar to NpGUT1 homolog
           (GI:23821294) [Arabidopsis thaliana]; contains Pfam
           profile PF03016: Exostosin family
          Length = 448

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -3

Query: 556 FILQSPNLKTKIT*RIEISIYNL*SKPLSK*QHN*KCTIH 437
           F  Q PN+KT +   ++I +Y+L SK       N +CT H
Sbjct: 79  FTSQQPNIKTDVFNNLKIYVYDLPSKFNKDWLANDRCTNH 118


>At1g01300.1 68414.m00046 aspartyl protease family protein contains
           Pfam domain, PF00026: eukaryotic aspartyl protease
          Length = 485

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
 Frame = -2

Query: 245 SGAKTGWKQCVAGTK--SSTSFRFKTEDEPTYTLVPGNVPRRRRLQTTATNTAR 90
           +G+   W QC    +  S +   F      TY  +P + P  RRL +   NT R
Sbjct: 161 TGSDIVWLQCAPCRRCYSQSDPIFDPRKSKTYATIPCSSPHCRRLDSAGCNTRR 214


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,413,075
Number of Sequences: 28952
Number of extensions: 265183
Number of successful extensions: 535
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)