Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0388
         (844 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...   125   9e-30
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    31   0.15 
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    27   2.5  
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc...    27   3.3  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    26   5.8  

>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score =  125 bits (301), Expect = 9e-30
 Identities = 59/84 (70%), Positives = 70/84 (83%)
 Frame = +3

Query: 255 TDPSKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKADLVNNLGTIAKSGTKAFMEALQA 434
           +DP  LD+ K+L+I+I P+K    L+I DTGIGMTK DL+NNLG IAKSGTK FMEA  +
Sbjct: 52  SDPHALDAEKDLFIRITPDKENKILSIRDTGIGMTKNDLINNLGVIAKSGTKQFMEAAAS 111

Query: 435 GADISMIGQFGVGFYSSYLVADRV 506
           GADISMIGQFGVGFYS+YLVAD+V
Sbjct: 112 GADISMIGQFGVGFYSAYLVADKV 135



 Score = 85.8 bits (203), Expect = 7e-18
 Identities = 41/50 (82%), Positives = 46/50 (92%)
 Frame = +1

Query: 106 AEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESL 255
           +  ETF F+AEI+QLMSLIINT YSNKEIFLRELISN+SDALDKIRY+SL
Sbjct: 2   SNTETFKFEAEISQLMSLIINTVYSNKEIFLRELISNASDALDKIRYQSL 51



 Score = 65.7 bits (153), Expect = 8e-12
 Identities = 32/50 (64%), Positives = 39/50 (78%), Gaps = 1/50 (2%)
 Frame = +2

Query: 509 VHSKHNDDEQYVWESSAGGSFTVRPDSGEP-LGRGTKIVLHVKEDLAEFM 655
           V SKHNDDEQY+WESSAGGSFTV  D+  P L RGT+I L +KED  +++
Sbjct: 137 VVSKHNDDEQYIWESSAGGSFTVTLDTDGPRLLRGTEIRLFMKEDQLQYL 186


>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 31.5 bits (68), Expect = 0.15
 Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
 Frame = +1

Query: 178 SNKEIFLRELISNSSDALDKIRYESLRIRQNSI-VAKSCTSRSFPTRTRALLRSSI---- 342
           S+   +L +L+++  D L K+R E LRIR+  I V  S       T TRA+++  +    
Sbjct: 325 SSAMTWLFQLLADHPDVLQKVREEQLRIRKGDIDVPLSLDLMEKMTYTRAVVKECLRLRP 384

Query: 343 PVLV*P 360
           PVL+ P
Sbjct: 385 PVLMVP 390


>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 20/53 (37%), Positives = 30/53 (56%)
 Frame = -1

Query: 415 KALVPDFAMVPKLFTKSALVIPIPVSMIVRVPSFLLGMILMYSSLPLSSFDGS 257
           KA++P F      +  +AL+ PI ++ I    +F+   IL + S PLS FDGS
Sbjct: 486 KAVIPIFTNQVS-YINNALIRPI-IAYINSTRTFI--PILCHVSKPLSDFDGS 534


>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 940

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/40 (30%), Positives = 26/40 (65%), Gaps = 5/40 (12%)
 Frame = +1

Query: 193 FLRELISNSSDALDKIRYESLRI-----RQNSIVAKSCTS 297
           F+R+++   +D L+K+R++SL +       +S+V ++ TS
Sbjct: 224 FIRKVVLTKADGLEKLRFQSLLVSLTATNNSSVVFEAATS 263


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 392 DGSQIVHQIGLGHTNTGIDDRKSALVLVGNDLDVQL 285
           DG   V  I  G     +DDR+  L+ + NDL+V L
Sbjct: 2   DGKPQVEVIVNGQVVPNLDDREYRLIKLENDLEVLL 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,213,041
Number of Sequences: 5004
Number of extensions: 69106
Number of successful extensions: 199
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)