Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0388
(844 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22016| Best HMM Match : HSP90 (HMM E-Value=0) 89 4e-18
SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10) 80 2e-15
SB_50934| Best HMM Match : HSP90 (HMM E-Value=0) 70 3e-12
SB_51568| Best HMM Match : RNA_pol_Rpa2_4 (HMM E-Value=2.3) 29 3.6
SB_45717| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_11623| Best HMM Match : ABC1 (HMM E-Value=0) 29 4.7
>SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)
Length = 581
Score = 89.0 bits (211), Expect = 4e-18
Identities = 40/64 (62%), Positives = 48/64 (75%)
Frame = +2
Query: 509 VHSKHNDDEQYVWESSAGGSFTVRPDSGEPLGRGTKIVLHVKEDLAEFMXXXXXXXXXXX 688
V +KHNDDEQY+WES+AGGSFTV+ DSGEPLGRGTKIVL++KED E++
Sbjct: 86 VTTKHNDDEQYIWESAAGGSFTVKRDSGEPLGRGTKIVLYLKEDQTEYLEEKRIKEIVKK 145
Query: 689 XSQF 700
SQF
Sbjct: 146 HSQF 149
Score = 50.8 bits (116), Expect = 1e-06
Identities = 22/26 (84%), Positives = 26/26 (100%)
Frame = +3
Query: 429 QAGADISMIGQFGVGFYSSYLVADRV 506
+AGADISMIGQFGVGFYS+YLVA++V
Sbjct: 59 KAGADISMIGQFGVGFYSAYLVAEKV 84
Score = 30.3 bits (65), Expect = 2.0
Identities = 11/17 (64%), Positives = 16/17 (94%)
Frame = +1
Query: 712 PIKLMVEKEREKELSDD 762
P+ L+V+KER+KE+SDD
Sbjct: 153 PLSLLVQKERDKEVSDD 169
>SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10)
Length = 739
Score = 80.2 bits (189), Expect = 2e-15
Identities = 42/86 (48%), Positives = 62/86 (72%), Gaps = 3/86 (3%)
Frame = +3
Query: 258 DPSKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKADLVNNLGTIAKSGTKAFMEALQAG 437
D S+ ++ E+ I+ ++ GT TI D G+GMT+ +L+++LG IAKSG+K FME L+
Sbjct: 110 DVSETETSLEIMIET--DQEAGTFTIQDNGVGMTEEELMDHLGVIAKSGSKVFMEKLKNE 167
Query: 438 ADIS---MIGQFGVGFYSSYLVADRV 506
A S +IGQFGVGFYS+++VAD+V
Sbjct: 168 ARSSHENIIGQFGVGFYSTFMVADKV 193
Score = 38.7 bits (86), Expect = 0.006
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +2
Query: 506 DVHSK--HNDDEQYVWESSAGGSFTVRPDSGEPLGRGTKIVLHVKEDLAEF 652
DV++K + + Y W S GS+ +G + RGTK+VLH+KED F
Sbjct: 194 DVYTKSYQPNSQGYFWTSDGSGSYEYAEANG--VARGTKLVLHLKEDCKRF 242
Score = 35.9 bits (79), Expect = 0.041
Identities = 16/61 (26%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Frame = +1
Query: 67 AVKKMPEEMETQPAEVETFAFQAEIAQLMSLIINTFYSN-KEIFLRELISNSSDALDKIR 243
+V+ + E + + E + ++ + + L++++ + ++F+RE+ISN+SDAL+K+R
Sbjct: 43 SVRLLSETTDDRSVEESSETSGEDVEEPLELLMSSQKTKLSQVFIREVISNASDALEKVR 102
Query: 244 Y 246
+
Sbjct: 103 H 103
>SB_50934| Best HMM Match : HSP90 (HMM E-Value=0)
Length = 855
Score = 69.7 bits (163), Expect = 3e-12
Identities = 35/56 (62%), Positives = 42/56 (75%)
Frame = +1
Query: 88 EMETQPAEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESL 255
+M+ + E FQAE+ ++M LIIN+ Y NKEIFLRELISNSSDALDKIR SL
Sbjct: 68 QMKELRDKAEKHEFQAEVNRMMKLIINSLYRNKEIFLRELISNSSDALDKIRLMSL 123
Score = 64.5 bits (150), Expect = 1e-10
Identities = 32/53 (60%), Positives = 37/53 (69%)
Frame = +3
Query: 255 TDPSKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKADLVNNLGTIAKSGTKA 413
TD + DSG EL IKI +K L + DTGIGMTK +L+ NLGTIAKSGT A
Sbjct: 124 TDKTAFDSGDELSIKIKADKENNILHVTDTGIGMTKEELIKNLGTIAKSGTIA 176
Score = 52.8 bits (121), Expect = 3e-07
Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Frame = +2
Query: 509 VHSKHNDDEQYVWESSAGGSFTVRPD-SGEPLGRGTKIVLHVKEDLAEFMXXXXXXXXXX 685
V SK+NDD+QY+WES A SF++ D G L RGT I LH+KE+ +++
Sbjct: 181 VTSKNNDDKQYIWESDA-SSFSISEDPRGPTLKRGTTISLHLKEEARDYLEPETIKDLVK 239
Query: 686 XXSQF 700
SQF
Sbjct: 240 KYSQF 244
>SB_51568| Best HMM Match : RNA_pol_Rpa2_4 (HMM E-Value=2.3)
Length = 375
Score = 29.5 bits (63), Expect = 3.6
Identities = 22/69 (31%), Positives = 33/69 (47%)
Frame = +1
Query: 34 PSSHFV*IKQKAVKKMPEEMETQPAEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELIS 213
PS V KA K +E ET+P E+ +F+ + ++ S+ +FLR I
Sbjct: 71 PSGSSVSESGKAKTKKEKEKETKPFEIALVSFEEDEFPMI-------LSDDSLFLRGFIQ 123
Query: 214 NSSDALDKI 240
SDA +KI
Sbjct: 124 LRSDASEKI 132
>SB_45717| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 29.1 bits (62), Expect = 4.7
Identities = 12/57 (21%), Positives = 31/57 (54%)
Frame = +3
Query: 264 SKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKADLVNNLGTIAKSGTKAFMEALQA 434
+K+ G+E+ + ++NE ++ +G ++ D++ N+G T++ +E +A
Sbjct: 265 AKISDGQEIKFSVFIDENEYRSICLNLQVGPSEPDVLKNIGVTRMPETRSNVENCRA 321
>SB_11623| Best HMM Match : ABC1 (HMM E-Value=0)
Length = 780
Score = 29.1 bits (62), Expect = 4.7
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Frame = +2
Query: 287 AVHQDHSQQERGHSYDHRYRYWYDQ----GRFGEQFGNHREIWY*SFHGGSSSRCRHQHD 454
AV H+ RGHS+ W G F + FG+ W + G+S CR
Sbjct: 150 AVGVPHAHSYRGHSFRRGATTWAFHLGIPGEFIQVFGD----WASDAYRGNSL-CRANCQ 204
Query: 455 WTVRCWLLLQ 484
W +RC ++ Q
Sbjct: 205 WLIRCVVIFQ 214
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,240,064
Number of Sequences: 59808
Number of extensions: 536098
Number of successful extensions: 1425
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1420
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2383424791
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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