Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0388
(844 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 25 0.66
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 25 1.2
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 25 1.2
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 25 1.2
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 25 1.2
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 25 1.2
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 25 1.2
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 25 1.2
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 25 1.2
AY463910-1|AAR24352.1| 843|Apis mellifera metabotropic glutamat... 23 4.7
AB161181-1|BAD08343.1| 933|Apis mellifera metabotropic glutamat... 23 4.7
DQ325077-1|ABD14091.1| 181|Apis mellifera complementary sex det... 22 8.1
DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex det... 22 8.1
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 25.4 bits (53), Expect = 0.66
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 569 FTVRPDSGEPLGRGTKIVL 625
FT+ PDSGE L G I+L
Sbjct: 253 FTLPPDSGEKLSLGVTILL 271
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 24.6 bits (51), Expect = 1.2
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 569 FTVRPDSGEPLGRGTKIVL 625
FT+ PDSGE L G I+L
Sbjct: 216 FTLPPDSGEKLTLGVTILL 234
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 24.6 bits (51), Expect = 1.2
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 569 FTVRPDSGEPLGRGTKIVL 625
FT+ PDSGE L G I+L
Sbjct: 216 FTLPPDSGEKLTLGVTILL 234
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 24.6 bits (51), Expect = 1.2
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 569 FTVRPDSGEPLGRGTKIVL 625
FT+ PDSGE L G I+L
Sbjct: 216 FTLPPDSGEKLTLGVTILL 234
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 24.6 bits (51), Expect = 1.2
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 569 FTVRPDSGEPLGRGTKIVL 625
FT+ PDSGE L G I+L
Sbjct: 216 FTLPPDSGEKLTLGVTILL 234
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 24.6 bits (51), Expect = 1.2
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 569 FTVRPDSGEPLGRGTKIVL 625
FT+ PDSGE L G I+L
Sbjct: 216 FTLPPDSGEKLTLGVTILL 234
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 24.6 bits (51), Expect = 1.2
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 569 FTVRPDSGEPLGRGTKIVL 625
FT+ PDSGE L G I+L
Sbjct: 216 FTLPPDSGEKLTLGVTILL 234
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 24.6 bits (51), Expect = 1.2
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 569 FTVRPDSGEPLGRGTKIVL 625
FT+ PDSGE L G I+L
Sbjct: 284 FTLPPDSGEKLTLGVTILL 302
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 24.6 bits (51), Expect = 1.2
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 569 FTVRPDSGEPLGRGTKIVL 625
FT+ PDSGE L G I+L
Sbjct: 284 FTLPPDSGEKLTLGVTILL 302
>AY463910-1|AAR24352.1| 843|Apis mellifera metabotropic glutamate
receptor 1 protein.
Length = 843
Score = 22.6 bits (46), Expect = 4.7
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = -1
Query: 655 HEFCQVLFDVKDDLCTSTKGLTAVWADCER 566
+ F L +++ D+C+ KGL A+ +R
Sbjct: 338 YAFALALHNLQKDVCSKLKGLCPSMANYDR 367
>AB161181-1|BAD08343.1| 933|Apis mellifera metabotropic glutamate
receptor protein.
Length = 933
Score = 22.6 bits (46), Expect = 4.7
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = -1
Query: 655 HEFCQVLFDVKDDLCTSTKGLTAVWADCER 566
+ F L +++ D+C+ KGL A+ +R
Sbjct: 428 YAFALALHNLQKDVCSKLKGLCPSMANYDR 457
>DQ325077-1|ABD14091.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.8 bits (44), Expect = 8.1
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +1
Query: 559 RRLVHSPPRQR*APWSRYKDRPSRQRGLGRIHGRTQNQRDRKETFPVSSAN 711
+R S R++ + + K R R+R R RT+ +R R+ S +N
Sbjct: 37 KRYSRSREREQKSYKNERKYRKYRERSKERSRDRTERERSREPKIISSLSN 87
>DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex
determiner protein.
Length = 191
Score = 21.8 bits (44), Expect = 8.1
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +1
Query: 559 RRLVHSPPRQR*APWSRYKDRPSRQRGLGRIHGRTQNQRDRKETFPVSSAN 711
+R S R++ + + K R R+R R RT+ +R R+ S +N
Sbjct: 37 KRYSRSREREQKSYKNERKYRKYRERSKERSRDRTERERSREPKIISSLSN 87
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,379
Number of Sequences: 438
Number of extensions: 4932
Number of successful extensions: 16
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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