Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0387
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomy...    28   1.4  
SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr 1|||M...    27   1.9  
SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase |Schizo...    27   2.5  
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi...    27   3.3  
SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyc...    26   4.4  
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar...    25   7.6  

>SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 482

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -1

Query: 572 FYAIENIKKTLTKHTGSRSEC 510
           F A ENI   +TKH  SR EC
Sbjct: 376 FMATENIIMAMTKHGASRHEC 396


>SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 360

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = +2

Query: 56  SNFTLNINSEFIYH---KSFTNPRDTRYVLRITLNFNECVIQFNNLMSLVY 199
           S+ T++  S++ Y+     F NP+  RY+L +++N    +    ++ SL Y
Sbjct: 310 SHRTMDGFSDYYYNGIPSYFQNPQKARYMLMLSINAGYSIQNITDIFSLEY 360


>SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 360

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = +2

Query: 56  SNFTLNINSEFIYH---KSFTNPRDTRYVLRITLNFNECVIQFNNLMSLVY 199
           S+ T++  S++ Y+     F NP+  RY+L +++N    +    ++ SL Y
Sbjct: 310 SHRTMDGFSDYYYNGIPAYFQNPQKARYMLMLSINAGYSIQNITDIFSLEY 360


>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 680

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
 Frame = +1

Query: 277 YAKRFIRVALSLALQVAVRRDDVIKYTYTHMLDVFF-FAPLLSYQCY*INI*QHYDYKLF 453
           Y K+F+    + A  +A+  +++ +Y Y H   V++ +A  + Y    IN     D   F
Sbjct: 468 YYKKFVEAIRASATSMAIALEEIDEYGYFHNSFVYYLYAAQMGYALAEINAAYLMDENKF 527

Query: 454 IK*NLKEINKVWHY 495
           +      IN V+ Y
Sbjct: 528 L------INSVFRY 535


>SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +1

Query: 262 HLCHSYAK--RFIRVALSLALQVAVRRDDVIKYTYTHMLDVFFFAPL 396
           HL   YA   +F      + L   + +DD++KY  +H + +  ++PL
Sbjct: 152 HLQELYASNPKFYPCVNQIELHPFLSQDDIVKYCQSHDIAIEAYSPL 198


>SPAC1B3.17 |clr2||chromatin silencing protein
           Clr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +3

Query: 495 LTIDNTFTATSSVLSESFFNVLYSVKVTTVTRICMQFGTAPLPAYVQ-TGIQF*VNFYAI 671
           LT+  TF   S+ L + F+ +    +   +  +C+   T+ LP+ +Q T   +  + Y  
Sbjct: 351 LTVLPTFGGESNSLDDHFYGIFRGAEKLWINDLCV-ISTSSLPSVLQKTSFMYISDIYVN 409

Query: 672 E 674
           E
Sbjct: 410 E 410


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,566,701
Number of Sequences: 5004
Number of extensions: 49639
Number of successful extensions: 114
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)