Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0387
         (677 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g22830.1 68418.m02669 magnesium transporter CorA-like family ...    30   1.6  
At1g77720.1 68414.m09049 protein kinase family protein contains ...    30   1.6  
At3g60470.1 68416.m06763 hypothetical protein contains Pfam prof...    29   3.7  
At2g27520.1 68415.m03329 F-box family protein contains Pfam prof...    28   4.9  
At4g39820.1 68417.m05641 expressed protein                             28   6.5  

>At5g22830.1 68418.m02669 magnesium transporter CorA-like family
           protein weak similarity to SP|Q01926 RNA splicing
           protein MRS2, mitochondrial precursor {Saccharomyces
           cerevisiae}; contains Pfam profile PF01544: CorA-like
           Mg2+ transporter protein; supporting cDNA
           gi|12007446|gb|AF322255.1|AF322255
          Length = 459

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
 Frame = +1

Query: 223 ELERKRETYISNCHLCHSYAKRFIRVAL----SLALQVAVRRDDVIKYTYTHMLDVFFFA 390
           E+E   E Y+  C  CH  A+R +  A     S+A+ ++ RR +V ++     +  F  A
Sbjct: 348 EIEMLLENYLQRCESCHGQAERLLDSAKEMEDSIAVNLSSRRLEVSRFELLLQVGTFCVA 407


>At1g77720.1 68414.m09049 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 777

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -1

Query: 662 KVNSKLYASLNVCR*GRCSKLHTNSSYCCYFYAIENIK 549
           KVN KLY  L     G  S++H   S  C  YA++ IK
Sbjct: 394 KVNGKLYQRLGKIGSGGSSEVHKVISSDCTIYALKKIK 431


>At3g60470.1 68416.m06763 hypothetical protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 540

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -3

Query: 213 VNHQSYTRDIRLLNCITHSLKFKVIRNTYLVSLGLVKLL*YMNSE 79
           VN ++YT  + L+  + HSLKF+ + +     +   KL+ Y+N E
Sbjct: 44  VNPEAYTPQLLLIGPLHHSLKFQALNSR--GDITNTKLMGYLNME 86


>At2g27520.1 68415.m03329 F-box family protein contains Pfam
           profile: PF00646 F-box domain
          Length = 347

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -2

Query: 445 YNHNVAKCLFNNTDKKEV-VRKRIHLTYACKCI 350
           YNH++A    NN+ KK     K + +TY CK +
Sbjct: 123 YNHDIALGYGNNSTKKSYDSYKILRITYGCKLV 155


>At4g39820.1 68417.m05641 expressed protein 
          Length = 408

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +1

Query: 217 TIELERKRETYISNCHLCHSYAKRFIRVALSLALQVAVRRD 339
           ++EL +KRET++ NC L      +   V+L L ++  + RD
Sbjct: 205 SVELWKKRETFVMNCLLGFHLGHKEFGVSLDL-MKELINRD 244


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,718,842
Number of Sequences: 28952
Number of extensions: 235831
Number of successful extensions: 443
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)