Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0386
         (690 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g01030.1 68417.m00140 pentatricopeptide (PPR) repeat-containi...    30   1.7  
At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pf...    28   5.1  
At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pf...    28   5.1  
At5g23280.1 68418.m02724 TCP family transcription factor, putati...    28   6.7  
At3g12690.3 68416.m01586 protein kinase, putative similar to vir...    28   6.7  
At3g12690.2 68416.m01585 protein kinase, putative similar to vir...    28   6.7  
At3g12690.1 68416.m01584 protein kinase, putative similar to vir...    28   6.7  
At1g01300.1 68414.m00046 aspartyl protease family protein contai...    27   8.9  

>At4g01030.1 68417.m00140 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 500

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
 Frame = -3

Query: 154 LRRSGEKLSGLCLRVNLLVEPFVAS---DGFDENGD 56
           L  SG+++ G CLR NL+ + +VA+   D + ++GD
Sbjct: 143 LLHSGKEVHGFCLRKNLICDAYVATALVDMYGKSGD 178


>At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pfam
           PF00400: WD domain, G-beta repeat; similar to WD-repeat
           protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
           sapiens]
          Length = 647

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = +3

Query: 12  SSRSTNGAFRYFKHRSPFSSNPSLATKGSTSKL 110
           SS S +G+F  F H SPFS    L  KG+ S L
Sbjct: 136 SSSSKSGSFGDF-HNSPFSQRDDLLKKGAKSWL 167


>At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pfam
           PF00400: WD domain, G-beta repeat; similar to WD-repeat
           protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
           sapiens]
          Length = 647

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = +3

Query: 12  SSRSTNGAFRYFKHRSPFSSNPSLATKGSTSKL 110
           SS S +G+F  F H SPFS    L  KG+ S L
Sbjct: 136 SSSSKSGSFGDF-HNSPFSQRDDLLKKGAKSWL 167


>At5g23280.1 68418.m02724 TCP family transcription factor, putative
           similar to PCF2 [(GI:2580440) Oryza sativa]
          Length = 250

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
 Frame = +3

Query: 69  SNPSLATKGSTSKLTLRHSPLSF----SPDLLSGSRFRSDVDS 185
           S  S++ +G+T+  +L H P S     SP +L G R R+D DS
Sbjct: 104 STASVSIRGATNSTSLDHKPTSLLGGTSPFIL-GKRVRADEDS 145


>At3g12690.3 68416.m01586 protein kinase, putative similar to viroid
           symptom modulation protein [Lycopersicon esculentum]
           gi|7672777|gb|AAF66637
          Length = 577

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 48  KHRSPFSSNPSLATKGSTSKLTLRHSPLSFSPDLLS 155
           KH+ P S  P  +T+G+ S+  L+H+  S   D L+
Sbjct: 56  KHQPPKSLEPPPSTRGTNSEGDLKHNTYSSDGDSLA 91


>At3g12690.2 68416.m01585 protein kinase, putative similar to viroid
           symptom modulation protein [Lycopersicon esculentum]
           gi|7672777|gb|AAF66637
          Length = 577

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 48  KHRSPFSSNPSLATKGSTSKLTLRHSPLSFSPDLLS 155
           KH+ P S  P  +T+G+ S+  L+H+  S   D L+
Sbjct: 56  KHQPPKSLEPPPSTRGTNSEGDLKHNTYSSDGDSLA 91


>At3g12690.1 68416.m01584 protein kinase, putative similar to viroid
           symptom modulation protein [Lycopersicon esculentum]
           gi|7672777|gb|AAF66637
          Length = 577

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 48  KHRSPFSSNPSLATKGSTSKLTLRHSPLSFSPDLLS 155
           KH+ P S  P  +T+G+ S+  L+H+  S   D L+
Sbjct: 56  KHQPPKSLEPPPSTRGTNSEGDLKHNTYSSDGDSLA 91


>At1g01300.1 68414.m00046 aspartyl protease family protein contains
           Pfam domain, PF00026: eukaryotic aspartyl protease
          Length = 485

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 18/48 (37%), Positives = 22/48 (45%)
 Frame = +3

Query: 42  YFKHRSPFSSNPSLATKGSTSKLTLRHSPLSFSPDLLSGSRFRSDVDS 185
           +F     FSS PS  T    S      SP+SF PD  S S   S+ +S
Sbjct: 15  FFLSLPSFSSLPSFQTLFPNSHSLPCASPVSFQPDSDSESLLESEFES 62


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,905,388
Number of Sequences: 28952
Number of extensions: 234896
Number of successful extensions: 575
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)