Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0384
(636 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0173 - 7433744-7433775,7434002-7434241,7434548-7437410 31 0.77
07_03_0776 + 21417476-21417691,21417775-21417855,21417941-214183... 30 1.3
04_03_0884 + 20543084-20543638 30 1.3
03_02_0999 - 13105030-13105434,13105716-13105850,13105933-131061... 29 3.1
03_02_0998 - 13097675-13098079,13098307-13098441,13098522-130987... 29 3.1
07_01_0633 - 4735298-4735485,4736083-4736114,4736203-4736297,473... 29 4.1
11_06_0128 - 20389375-20389781,20389988-20392787 28 5.4
01_06_1363 - 36681605-36681789,36681875-36681908,36682017-366821... 28 5.4
05_01_0356 + 2785410-2785670,2785843-2785960,2786800-2786891,278... 27 9.4
01_06_1751 + 39656276-39656279,39656411-39656515,39656680-396568... 27 9.4
>02_02_0173 - 7433744-7433775,7434002-7434241,7434548-7437410
Length = 1044
Score = 31.1 bits (67), Expect = 0.77
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +2
Query: 23 NIQGLNIHFMRITPKVPKDVGNSTTSVTPRMAG-LRQGSSTKAIPHLTAVSKDRNFGSGK 199
N+ LNI R+T ++P +G+ + R+AG L +GS +++ +L +K +F +
Sbjct: 580 NLASLNISHNRLTGRIPSTLGSCVRLESLRVAGNLLEGSIPQSLANLRG-TKVLDFSANN 638
Query: 200 LS 205
LS
Sbjct: 639 LS 640
>07_03_0776 +
21417476-21417691,21417775-21417855,21417941-21418342,
21418457-21418621,21418729-21419460,21419542-21419748
Length = 600
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -2
Query: 326 PSSWPIQXF*KMTCQLSAASRRPGTXPPAVGK 231
PSS P++ + TC+ AAS P PPA G+
Sbjct: 7 PSSQPVRLQQRWTCRSRAASPAPLLPPPATGR 38
>04_03_0884 + 20543084-20543638
Length = 184
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Frame = +3
Query: 96 LLLLHGWPGSVRGV----LRRPFLISQLSAKTGTSALGNYRLQV*PGYGFSDGGRXRPGP 263
++L+ GWPG RG L F+++ + G S L + G SDGGR P P
Sbjct: 49 VVLIRGWPGE-RGAGMYALCLLFVLALAALTEGLSVLSRRLARRGGGAASSDGGRPAPAP 107
Query: 264 SA 269
++
Sbjct: 108 AS 109
>03_02_0999 -
13105030-13105434,13105716-13105850,13105933-13106133,
13106374-13106673,13106764-13106964,13107246-13107410,
13107484-13107663,13108171-13108212,13108327-13108404
Length = 568
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 125 RQGSSTKAIPHLTAVSKDRNFGSGKLSAPSLTW 223
R STK P + KDR G+G L P+ T+
Sbjct: 404 RSAGSTKGKPKIEVYEKDRKKGAGALITPAKTY 436
>03_02_0998 -
13097675-13098079,13098307-13098441,13098522-13098722,
13099060-13099359,13099449-13099649,13099932-13100096,
13100170-13100349,13100896-13100937,13101040-13101117
Length = 568
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 125 RQGSSTKAIPHLTAVSKDRNFGSGKLSAPSLTW 223
R STK P + KDR G+G L P+ T+
Sbjct: 404 RSAGSTKGKPKIEVYEKDRKKGAGALITPAKTY 436
>07_01_0633 -
4735298-4735485,4736083-4736114,4736203-4736297,
4736414-4736487,4736682-4736817,4736902-4736965,
4737101-4737166,4737265-4737446,4737824-4737948,
4738031-4738169,4738250-4738369,4738675-4738746,
4738900-4738935,4739633-4739749,4739821-4739953,
4740053-4740156,4740243-4740370,4740880-4741010,
4741561-4741757,4743906-4744583
Length = 938
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +3
Query: 219 PGYGFSDGGRXRPGPSAG 272
PGYG DGG P P+AG
Sbjct: 48 PGYGRGDGGGRGPAPAAG 65
>11_06_0128 - 20389375-20389781,20389988-20392787
Length = 1068
Score = 28.3 bits (60), Expect = 5.4
Identities = 9/26 (34%), Positives = 19/26 (73%)
Frame = +2
Query: 11 HFKTNIQGLNIHFMRITPKVPKDVGN 88
+ T++Q L++ + I+ ++PKD+GN
Sbjct: 407 NLSTSLQTLSLQYNTISGRIPKDIGN 432
>01_06_1363 -
36681605-36681789,36681875-36681908,36682017-36682154,
36682578-36682724,36682821-36682865,36683043-36683331,
36683443-36683669,36684109-36684528
Length = 494
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +3
Query: 66 RSLKTLEIVPLLLLHGWPGSVRGVLRRPFLISQLSAKTGTSALGNY 203
R + ++ IVPL +GW S GV++ FL L + AL +Y
Sbjct: 115 RVVMSVAIVPLSQAYGWTPSFAGVVQSSFLWGYLVSPIIGGALVDY 160
>05_01_0356 + 2785410-2785670,2785843-2785960,2786800-2786891,
2787114-2787176,2787299-2787397,2787726-2787884,
2788420-2788491,2788567-2788699,2788813-2788877,
2789016-2789091,2789236-2789337,2789524-2789716,
2790576-2790654,2792939-2793007,2793261-2793311,
2793680-2793742,2793926-2794041,2794263-2794347,
2794898-2794957,2795594-2795639,2796011-2796084,
2796350-2796400,2796474-2796674,2796747-2796791,
2797063-2797156,2797226-2797371,2797510-2797739,
2798136-2798196,2798290-2798347,2799020-2799513
Length = 1151
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -2
Query: 284 QLSAASRRPGTXPPAVGKAITRLNLEP 204
Q + ASRR GT PPA +TR ++EP
Sbjct: 991 QSAPASRRSGTRPPATWSDMTR-SVEP 1016
>01_06_1751 +
39656276-39656279,39656411-39656515,39656680-39656801,
39657826-39658869
Length = 424
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +2
Query: 62 PKVPKDVGNSTTSVTPRMAGLRQGSSTKAIPHLTAVSKDRNFGSGK 199
PK K + ++T V P QG+ + + TAV +D N K
Sbjct: 291 PKRRKGLVHTTEEVKPETTAASQGTGIEGVKPKTAVGQDTNIEDPK 336
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,402,438
Number of Sequences: 37544
Number of extensions: 334637
Number of successful extensions: 844
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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