Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0384
         (636 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64852-7|AAB04970.1|  452|Caenorhabditis elegans Hypothetical pr...    42   4e-04
Z74029-6|CAM84812.1|  457|Caenorhabditis elegans Hypothetical pr...    30   1.2  

>U64852-7|AAB04970.1|  452|Caenorhabditis elegans Hypothetical
           protein W01A11.1 protein.
          Length = 452

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 40/126 (31%), Positives = 58/126 (46%), Gaps = 4/126 (3%)
 Frame = +2

Query: 2   QYPHFKTNIQGLNIHFMRITPKVPKDVGNSTTSVTPRMAGLRQGSSTKAIPHLTAVSK-- 175
           Q+P FKT I+GL +HF+ + P  PK   N    +             K IP LT   K  
Sbjct: 115 QFPQFKTEIEGLQVHFLHVKP--PKSYKNVKPILVAHGWPGNVFEFYKFIPLLTDPKKHG 172

Query: 176 -DRNFGSGKLSAPSLT-WLWLFRRRAVXSRAFGWLLKVGRSFFKXPEWAXNLVTSKYYVQ 349
            D +F + ++ APS+  + W  + +      F   L   R F K       L  +K+Y+Q
Sbjct: 173 IDSDF-AFEVIAPSIPGYGWSDQPK---KTGFS-QLACARVFRKL---MLRLGYNKFYLQ 224

Query: 350 GGDWGS 367
           GGDWG+
Sbjct: 225 GGDWGA 230



 Score = 27.9 bits (59), Expect = 6.4
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +3

Query: 87  IVPLLLLHGWPGSVRGVLR-RPFLISQLSAKTGTSALGNYRLQV*PGYGFSD 239
           + P+L+ HGWPG+V    +  P L         +           PGYG+SD
Sbjct: 142 VKPILVAHGWPGNVFEFYKFIPLLTDPKKHGIDSDFAFEVIAPSIPGYGWSD 193


>Z74029-6|CAM84812.1|  457|Caenorhabditis elegans Hypothetical
           protein C45B11.6 protein.
          Length = 457

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = +2

Query: 5   YPHFKTNIQGLNIHFMRI-TPKVPKD 79
           +  +KT I+GL IHF+R+ TP  PKD
Sbjct: 110 FKQYKTEIEGLKIHFLRVSTP--PKD 133



 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 75  KTLEIVPLLLLHGWPGS 125
           K   +VPLL+ HG+PGS
Sbjct: 134 KKSRVVPLLIFHGFPGS 150


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,081,779
Number of Sequences: 27780
Number of extensions: 259141
Number of successful extensions: 537
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)