Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0384
         (636 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g47900.1 68414.m05334 expressed protein                             30   1.5  
At2g45340.1 68415.m05642 leucine-rich repeat transmembrane prote...    29   2.6  
At5g13290.2 68418.m01527 protein kinase family protein contains ...    29   3.4  
At3g46980.2 68416.m05102 transporter-related low similarity to b...    28   6.0  
At3g46980.1 68416.m05101 transporter-related low similarity to b...    28   6.0  
At3g05060.1 68416.m00549 SAR DNA-binding protein, putative stron...    28   6.0  
At2g26940.1 68415.m03231 zinc finger (C2H2 type) family protein ...    28   6.0  

>At1g47900.1 68414.m05334 expressed protein
          Length = 1054

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
 Frame = +2

Query: 59   TPKVPKDVGNSTTSVTPRMAG---LRQGSSTKAIPHLTAVSKDRNFGS 193
            +PK P D   S T+ +P   G    R GSST A P   +    R F S
Sbjct: 1003 SPKCPSDSETSDTTTSPSRVGSRLSRSGSSTNATPEKASRGISRFFSS 1050


>At2g45340.1 68415.m05642 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 691

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 20  TNIQGLNIHFMRITPKVPKDVGN 88
           T++ GL +HF  +T  +PKD+ N
Sbjct: 92  TSLTGLYLHFNSLTGHIPKDISN 114


>At5g13290.2 68418.m01527 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 331

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 139 YEGHSSSHSCQQRQELRLWEIIGSKFN 219
           Y    SS S +Q++ ++LW+ IG  FN
Sbjct: 289 YSAPESSQSNRQKRHIQLWDDIGCSFN 315


>At3g46980.2 68416.m05102 transporter-related low similarity to
           brain specific Na+-dependent inorganic phosphate
           cotransporter from [Rattus norvegicus] GI:507415, [Homo
           sapiens] GI:7328925, vesicular glutamate transporter 3
           from [Rattus norvegicus] GI:21685382; contains Pfam
           profile PF00083: major facilitator superfamily protein
          Length = 469

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +3

Query: 66  RSLKTLEIVPLLLLHGWPGSVRGVLRRPFLISQL-SAKTGTSALGNYRLQV*PGYG 230
           R + ++ IVPL L  GW  S  G+++  FL   L S   G + +  Y  +V   +G
Sbjct: 129 RVVMSVAIVPLSLSRGWSKSFSGIVQSSFLWGYLISPIAGGTLVDRYGGKVVMAWG 184


>At3g46980.1 68416.m05101 transporter-related low similarity to
           brain specific Na+-dependent inorganic phosphate
           cotransporter from [Rattus norvegicus] GI:507415, [Homo
           sapiens] GI:7328925, vesicular glutamate transporter 3
           from [Rattus norvegicus] GI:21685382; contains Pfam
           profile PF00083: major facilitator superfamily protein
          Length = 533

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +3

Query: 66  RSLKTLEIVPLLLLHGWPGSVRGVLRRPFLISQL-SAKTGTSALGNYRLQV*PGYG 230
           R + ++ IVPL L  GW  S  G+++  FL   L S   G + +  Y  +V   +G
Sbjct: 129 RVVMSVAIVPLSLSRGWSKSFSGIVQSSFLWGYLISPIAGGTLVDRYGGKVVMAWG 184


>At3g05060.1 68416.m00549 SAR DNA-binding protein, putative strong
           similarity to SAR DNA-binding protein-1 [Pisum sativum]
           GI:3132696; contains Pfam profile PF01798: Putative
           snoRNA binding domain
          Length = 533

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 125 RQGSSTKAIPHLTAVSKDRNFGSGKLSAPSLTW 223
           R   S+K  P +   +KD+  GSG L  P+ T+
Sbjct: 404 RLSGSSKGKPKIEVYNKDKKMGSGGLITPAKTY 436


>At2g26940.1 68415.m03231 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 286

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +1

Query: 37  EYSLHEDYSKGP*RRWK*YHFCYSTDGRAPSGEFYEGHSSSHSCQ 171
           E S  ED S  P R+    HFC   + +  SG+ Y GH   HS +
Sbjct: 34  ERSEDEDESPQPQRK----HFCVICEKQFSSGKAYGGHVRIHSIE 74


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,812,988
Number of Sequences: 28952
Number of extensions: 252725
Number of successful extensions: 643
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)