Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0383
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.17c |||succinate-CoA ligase alpha subunit|Schizosacchar...   104   1e-23
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    29   0.91 
SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces po...    27   2.8  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    26   4.9  
SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease |Schizosacc...    26   4.9  
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    26   6.4  
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei...    25   8.5  

>SPAC16E8.17c |||succinate-CoA ligase alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score =  104 bits (250), Expect = 1e-23
 Identities = 48/75 (64%), Positives = 57/75 (76%)
 Frame = +3

Query: 510 PNCPGIIAPEKCKIGIMPAAVHKRGCIGVVSRSGTLTYEACHQTTITGLGKLCVSVLXGV 689
           PNCPGII P +CKIGIMP+ +HK GCIG+VSRSGTLTYEA +QTT T LG+  V  + G 
Sbjct: 155 PNCPGIIRPGQCKIGIMPSHIHKPGCIGIVSRSGTLTYEAVNQTTQTDLGQSLVIGIGGD 214

Query: 690 PSTGQTFIDCLEVFL 734
           P  G  FID L++FL
Sbjct: 215 PFPGTNFIDALKLFL 229



 Score = 89.8 bits (213), Expect = 3e-19
 Identities = 43/80 (53%), Positives = 52/80 (65%)
 Frame = +1

Query: 256 GVSPKKAGTEHLGKPVFGTVKEAKAGTGATASVIYVPPPGXXXXXXXXXXXXMPLIVCIT 435
           G +PKKAGT HLGKPVFGT++EA   T A AS ++VPPP             +PLIV IT
Sbjct: 70  GTNPKKAGTTHLGKPVFGTIEEAMKETKADASAVFVPPPLAAGAIEEAIAAEVPLIVAIT 129

Query: 436 EGVXQHDMVRVKHALLRQNK 495
           EG+ QHDM+RV   L  Q+K
Sbjct: 130 EGIPQHDMLRVSDILKTQSK 149



 Score = 67.7 bits (158), Expect = 2e-12
 Identities = 34/61 (55%), Positives = 43/61 (70%)
 Frame = +2

Query: 71  LSKFKDGLKLGNVRFASGNPYAETRKNLILTSETKVIVQGFTGKQGTFHSQQALDYGTKV 250
           L +F    +L N    S + Y +T  NL++ S+TKVI QGFTGKQGTFH+Q A+DYGTKV
Sbjct: 12  LRRFSSSSQLKN----SKSLYEQTIPNLMINSDTKVIFQGFTGKQGTFHAQHAMDYGTKV 67

Query: 251 V 253
           V
Sbjct: 68  V 68


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 28.7 bits (61), Expect = 0.91
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -3

Query: 685 PSNTDTQSLPKPVIVV**QAS*VNVPERDTTPMQP 581
           P +T+T  LP P   V    S VN+P    TP QP
Sbjct: 248 PQSTNTSQLPMPSRNVNNLGSQVNIPPPPATPSQP 282


>SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 450

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 474 CPLETKQV*TGCPNCPGIIAPEKCKI 551
           C + T+Q+  G  N PG++AP   K+
Sbjct: 402 CGVATQQILDGVINTPGVLAPNDMKL 427


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 16/78 (20%), Positives = 35/78 (44%)
 Frame = +2

Query: 2    ESLVFPFRRFTFNNSTMAMPVRVLSKFKDGLKLGNVRFASGNPYAETRKNLILTSETKVI 181
            ESL      +  NN+     V+V   F+  +KLG V        ++T++N +++     +
Sbjct: 792  ESLDSHESEYKLNNTPSEQSVKVSHFFEFNMKLGEVTLILCREDSQTKRNSMVSVNFAKL 851

Query: 182  VQGFTGKQGTFHSQQALD 235
            +  F   +   H + +++
Sbjct: 852  LLSFNQFEDNSHLRMSIN 869


>SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -2

Query: 350 EAVAPVPAFASLTVPNTGLPRCSVPAFFGDTPQQL 246
           EA A V +F  L      LPR S+   FG  PQ +
Sbjct: 20  EANATVGSFLDLVAAKFSLPRNSIALKFGFPPQDI 54


>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +2

Query: 17  PFRRFTFNNSTMAMPVRVLSKFKDGLK-LGNVRFASGNPYA 136
           PF    F N T  +PV  +S+  +G +   N   +   P+A
Sbjct: 33  PFESSVFENKTQVLPVDSVSRLSNGARSRSNSNISLSEPHA 73


>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
           Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 114 NRTLPSFSPSLNLERTRTGIAIVELLNVNL 25
           NR  PS+S SLN   T   ++ VE +N +L
Sbjct: 297 NRAPPSYSFSLNCSHTYQPVSCVEPVNHDL 326


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,909,240
Number of Sequences: 5004
Number of extensions: 58298
Number of successful extensions: 159
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)