Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0383
         (738 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54338| Best HMM Match : Ligase_CoA (HMM E-Value=0)                  92   5e-19
SB_4600| Best HMM Match : No HMM Matches (HMM E-Value=.)               48   8e-06
SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.18 
SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077)            33   0.24 
SB_52861| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_29154| Best HMM Match : RNA_pol_Rpb2_7 (HMM E-Value=2.3)            30   1.7  
SB_899| Best HMM Match : Alpha_L_fucos (HMM E-Value=0)                 29   3.0  
SB_564| Best HMM Match : TrkA_N (HMM E-Value=0.05)                     28   9.1  

>SB_54338| Best HMM Match : Ligase_CoA (HMM E-Value=0)
          Length = 445

 Score = 91.9 bits (218), Expect = 5e-19
 Identities = 42/74 (56%), Positives = 50/74 (67%)
 Frame = +3

Query: 510 PNCPGIIAPEKCKIGIMPAAVHKRGCIGVVSRSGTLTYEACHQTTITGLGKLCVSVLXGV 689
           PNCPG+I P +CKIGIMP  +H  G +G+VSRSGTLTYEA  QTT  G G+     + G 
Sbjct: 18  PNCPGVITPGECKIGIMPGHIHLPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGD 77

Query: 690 PSTGQTFIDCLEVF 731
           P  G  FID LE+F
Sbjct: 78  PIPGSNFIDILELF 91


>SB_4600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1140

 Score = 48.0 bits (109), Expect = 8e-06
 Identities = 30/62 (48%), Positives = 35/62 (56%), Gaps = 15/62 (24%)
 Frame = +3

Query: 594 VVSRSGTLTYEACHQTTITGLGK-LCV--------------SVLXGVPSTGQTFIDCLEV 728
           +VSRSGTLTYEA HQT+   LG+ LCV                + G P  G  F+DCLEV
Sbjct: 2   IVSRSGTLTYEAVHQTSHVNLGQSLCVVNNESCVYNYLFLPEGIGGDPFNGTNFVDCLEV 61

Query: 729 FL 734
           FL
Sbjct: 62  FL 63


>SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 565

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 518 SWYHCSREV*NWYHASCSAQTWLHRS 595
           +WYH S+   NWYH S +   W H S
Sbjct: 265 NWYHPSKTQANWYHPSKTQSNWNHPS 290



 Score = 32.7 bits (71), Expect = 0.32
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 518 SWYHCSREV*NWYHASCSAQTWLHRS 595
           +WYH ++   NWYH S +   W H S
Sbjct: 255 NWYHPTKTQANWYHPSKTQANWYHPS 280



 Score = 32.7 bits (71), Expect = 0.32
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 518 SWYHCSREV*NWYHASCSAQTWLHRS 595
           +WYH S+   NWYH + +   W H S
Sbjct: 465 NWYHPSKTQANWYHPTKTQANWYHPS 490



 Score = 31.9 bits (69), Expect = 0.56
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 518 SWYHCSREV*NWYHASCSAQTWLH 589
           +WYH ++   NWYH S +   W H
Sbjct: 475 NWYHPTKTQANWYHPSKTKANWYH 498



 Score = 31.5 bits (68), Expect = 0.74
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 518 SWYHCSREV*NWYHASCSAQTWLHRS 595
           +WYH ++   NWYH + +   W H S
Sbjct: 145 NWYHRTKTQANWYHPTKTQANWYHPS 170



 Score = 31.5 bits (68), Expect = 0.74
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 518 SWYHCSREV*NWYHASCSAQTWLHRS 595
           +WYH ++   NWYH + +   W H S
Sbjct: 245 NWYHPTKTQANWYHPTKTQANWYHPS 270



 Score = 31.1 bits (67), Expect = 0.97
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 518 SWYHCSREV*NWYHASCSAQTWLH 589
           +WYH S+   NWYH   +   W H
Sbjct: 485 NWYHPSKTKANWYHPIKTQSNWYH 508



 Score = 30.7 bits (66), Expect = 1.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 518 SWYHCSREV*NWYHASCSAQTWLH 589
           +WYH ++   NWYH + +   W H
Sbjct: 505 NWYHPTKTQANWYHPTKTQANWYH 528



 Score = 30.7 bits (66), Expect = 1.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 518 SWYHCSREV*NWYHASCSAQTWLH 589
           +WYH ++   NWYH + +   W H
Sbjct: 515 NWYHPTKTQANWYHPTKTQANWCH 538



 Score = 29.5 bits (63), Expect = 3.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 518 SWYHCSREV*NWYHASCSAQTWLH 589
           +WYH  +   NWYH + +   W H
Sbjct: 495 NWYHPIKTQSNWYHPTKTQANWYH 518



 Score = 29.1 bits (62), Expect = 3.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 518 SWYHCSREV*NWYHASCSAQTW 583
           +WYH S+   NWYH + +   W
Sbjct: 345 NWYHPSKTQVNWYHPTKTQANW 366


>SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077)
          Length = 677

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 518 SWYHCSREV*NWYHASCSAQTWLHRS 595
           +WYH ++   NWYH S +   W H S
Sbjct: 500 NWYHPTKTQANWYHPSKTQSNWYHPS 525



 Score = 31.5 bits (68), Expect = 0.74
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 518 SWYHCSREV*NWYHASCSAQTWLHRS 595
           +WYH ++   NWYH + +   W H S
Sbjct: 490 NWYHPTKTQCNWYHPTKTQANWYHPS 515



 Score = 29.9 bits (64), Expect = 2.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 518 SWYHCSREV*NWYHASCSAQTWLH 589
           +WYH ++   NWYH + +   W H
Sbjct: 480 NWYHPTKTQANWYHPTKTQCNWYH 503



 Score = 28.7 bits (61), Expect = 5.2
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 518 SWYHCSREV*NWYHASCSAQTWLHRS 595
           +W H S+   NWYH   +   W H S
Sbjct: 390 NWNHPSKTQANWYHPPKTQSNWYHPS 415


>SB_52861| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1487

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -1

Query: 417 GHFSLNSF*NGC-CSSRGRYINNRGSCSC 334
           GHF L  + + C C+  G   + RG CSC
Sbjct: 381 GHFFLQGYCSRCQCNGHGSICDERGKCSC 409


>SB_29154| Best HMM Match : RNA_pol_Rpb2_7 (HMM E-Value=2.3)
          Length = 416

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 518 SWYHCSREV*NWYHASCSAQTW 583
           SWYHCS+      H  CSA +W
Sbjct: 215 SWYHCSKIPDKERHQFCSANSW 236


>SB_899| Best HMM Match : Alpha_L_fucos (HMM E-Value=0)
          Length = 1127

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/57 (21%), Positives = 29/57 (50%)
 Frame = +3

Query: 516 CPGIIAPEKCKIGIMPAAVHKRGCIGVVSRSGTLTYEACHQTTITGLGKLCVSVLXG 686
           C  +I+ ++C + ++PA +  + C+ ++     +    C +      GK CV+++ G
Sbjct: 809 CVALISGKEC-VALIPALIPGKECVALIPGKECVALIPCKECVALIPGKECVALIPG 864


>SB_564| Best HMM Match : TrkA_N (HMM E-Value=0.05)
          Length = 226

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/26 (57%), Positives = 16/26 (61%)
 Frame = +2

Query: 173 KVIVQGFTGKQGTFHSQQALDYGTKV 250
           KV+V G TGK G    QQALD G  V
Sbjct: 9   KVVVFGGTGKTGLHVVQQALDRGHHV 34


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,642,124
Number of Sequences: 59808
Number of extensions: 473925
Number of successful extensions: 1221
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1212
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)