Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0383
         (738 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70203-4|CAA94107.1|  322|Caenorhabditis elegans Hypothetical pr...   113   1e-25
AF003389-2|AAC71132.1|  321|Caenorhabditis elegans Hypothetical ...   113   2e-25
Z98851-3|CAB11538.2|  659|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U37429-10|AAN63413.2|  100|Caenorhabditis elegans Hypothetical p...    29   3.4  
U53342-2|AAA96214.1|  272|Caenorhabditis elegans Suppressor of a...    28   6.0  
U53342-1|AAA96213.2|  371|Caenorhabditis elegans Suppressor of a...    28   6.0  

>Z70203-4|CAA94107.1|  322|Caenorhabditis elegans Hypothetical
           protein C05G5.4 protein.
          Length = 322

 Score =  113 bits (272), Expect = 1e-25
 Identities = 52/77 (67%), Positives = 60/77 (77%), Gaps = 1/77 (1%)
 Frame = +3

Query: 510 PNCPGIIAPEKCKIGIMPAAVHKRGCIGVVSRSGTLTYEACHQTTITGLGK-LCVSVLXG 686
           PNCPGII+ ++CKIGIMP  +HKRGCIG+VSRSGTLTYEA HQTT  G G+ LCV +  G
Sbjct: 148 PNCPGIISADQCKIGIMPGHIHKRGCIGIVSRSGTLTYEAVHQTTQVGFGQTLCVGI-GG 206

Query: 687 VPSTGQTFIDCLEVFLK 737
            P  G  FIDCL VFL+
Sbjct: 207 DPFNGTNFIDCLNVFLE 223



 Score = 95.5 bits (227), Expect = 3e-20
 Identities = 47/80 (58%), Positives = 53/80 (66%)
 Frame = +1

Query: 256 GVSPKKAGTEHLGKPVFGTVKEAKAGTGATASVIYVPPPGXXXXXXXXXXXXMPLIVCIT 435
           GV+  KAGTEHLG PVF  V EA+  TGA ASVIYVP               +PL+VCIT
Sbjct: 63  GVNANKAGTEHLGLPVFKNVSEARNKTGADASVIYVPASAAGSAIEEAMDAEIPLVVCIT 122

Query: 436 EGVXQHDMVRVKHALLRQNK 495
           EG+ QHDMVRVK  LL+QNK
Sbjct: 123 EGIPQHDMVRVKSRLLKQNK 142



 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 27/41 (65%), Positives = 31/41 (75%)
 Frame = +2

Query: 131 YAETRKNLILTSETKVIVQGFTGKQGTFHSQQALDYGTKVV 253
           Y  T  NL +  +TKVIVQGFTGKQGTFH +Q L+Y TKVV
Sbjct: 21  YNSTYNNLKINKDTKVIVQGFTGKQGTFHGKQMLEYNTKVV 61


>AF003389-2|AAC71132.1|  321|Caenorhabditis elegans Hypothetical
           protein F23H11.3 protein.
          Length = 321

 Score =  113 bits (271), Expect = 2e-25
 Identities = 51/76 (67%), Positives = 57/76 (75%)
 Frame = +3

Query: 510 PNCPGIIAPEKCKIGIMPAAVHKRGCIGVVSRSGTLTYEACHQTTITGLGKLCVSVLXGV 689
           PNCPGIIA   CKIGIMP  +HK+GCIG+VSRSGTLTYEA HQTT  GLG+     + G 
Sbjct: 149 PNCPGIIASGDCKIGIMPGHIHKKGCIGIVSRSGTLTYEAVHQTTTVGLGQTRCIGIGGD 208

Query: 690 PSTGQTFIDCLEVFLK 737
           P  G  FIDCLEVFL+
Sbjct: 209 PFNGTNFIDCLEVFLE 224



 Score = 91.5 bits (217), Expect = 6e-19
 Identities = 47/80 (58%), Positives = 53/80 (66%)
 Frame = +1

Query: 256 GVSPKKAGTEHLGKPVFGTVKEAKAGTGATASVIYVPPPGXXXXXXXXXXXXMPLIVCIT 435
           GVSP KAG  HLG PVFG+V EAK  TGA A+VIYVP  G            + LIV IT
Sbjct: 64  GVSPNKAGQTHLGLPVFGSVAEAKDRTGADATVIYVPAAGAARAIHEAMDAEIGLIVAIT 123

Query: 436 EGVXQHDMVRVKHALLRQNK 495
           EG+ Q DMVRVK+ LL+QNK
Sbjct: 124 EGIPQQDMVRVKNRLLKQNK 143



 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 26/41 (63%), Positives = 33/41 (80%)
 Frame = +2

Query: 131 YAETRKNLILTSETKVIVQGFTGKQGTFHSQQALDYGTKVV 253
           Y +TR NL++   TKVIVQGFTG+QGTFHS+Q L+Y T +V
Sbjct: 22  YNDTRNNLMINKSTKVIVQGFTGRQGTFHSKQMLEYNTNLV 62


>Z98851-3|CAB11538.2|  659|Caenorhabditis elegans Hypothetical
           protein H12I19.4 protein.
          Length = 659

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = -3

Query: 283 LYQPSLVTLLNNFSTIVKGLLAVEGTLLSSETLNNHFCF 167
           L++P ++ L++ +S  VKG +  E T  + E +NN+  F
Sbjct: 497 LHKPDILFLISRYSDYVKGPILNEETDRTLEKMNNNIAF 535


>U37429-10|AAN63413.2|  100|Caenorhabditis elegans Hypothetical
           protein F09E5.16 protein.
          Length = 100

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -1

Query: 378 SSRGRYINNRGSCSCACLCLFD-CTKHRLTK 289
           SSRG  +  R + S AC CL   CT H +TK
Sbjct: 70  SSRGSVMRRRSAGSYACPCLHKVCTYHCMTK 100


>U53342-2|AAA96214.1|  272|Caenorhabditis elegans Suppressor of
           activated let-60ras protein 7, isoform a protein.
          Length = 272

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -2

Query: 527 DTRTVRTTSLDLFCLKRACFTRTISCCXTP 438
           D   + T  +D  C+ R+C    + CC  P
Sbjct: 237 DQTELTTDFMDPICISRSCHNEDVGCCTIP 266


>U53342-1|AAA96213.2|  371|Caenorhabditis elegans Suppressor of
           activated let-60ras protein 7, isoform b protein.
          Length = 371

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -2

Query: 527 DTRTVRTTSLDLFCLKRACFTRTISCCXTP 438
           D   + T  +D  C+ R+C    + CC  P
Sbjct: 336 DQTELTTDFMDPICISRSCHNEDVGCCTIP 365


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,541,140
Number of Sequences: 27780
Number of extensions: 353999
Number of successful extensions: 842
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)