Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0381
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr 2...    29   0.83 
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    25   7.8  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    25   7.8  

>SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 518

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +1

Query: 313 EERLAALPIGQETWFESDATPRWQSSEV--DDVSAAFLDNL 429
           E  +AA P+G+ TW   D  P+WQ  +   + V A + D +
Sbjct: 372 ERAIAAAPLGEMTWARMD-YPKWQDIKAFHEGVRAVYPDRM 411


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +1

Query: 268 DPSAQYLQNEAPQRHEERLAALPIGQETWFESDATPRWQSSEVDDVS 408
           +PS   +    P+   +  A LPIG ++  +SD T    S+  +  S
Sbjct: 276 NPSTTKITYNPPKLPMKDFATLPIGYQSTCDSDETSELSSTSSEQTS 322


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = +2

Query: 149 VPREYPDDEYYY--APKIQYYYDAPAVNVP 232
           +PRE+P  + +Y  AP   YY  A   N P
Sbjct: 639 IPREFPQAQIFYSDAPYPGYYNPAQFQNAP 668


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,653,495
Number of Sequences: 5004
Number of extensions: 53022
Number of successful extensions: 132
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)