Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0381
         (688 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4072| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.2  
SB_7266| Best HMM Match : UPAR_LY6 (HMM E-Value=0.015)                 29   2.7  
SB_32327| Best HMM Match : ig (HMM E-Value=7.9e-23)                    29   4.7  
SB_47223| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_28108| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_10846| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  

>SB_4072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1364

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/68 (27%), Positives = 32/68 (47%)
 Frame = +2

Query: 188 PKIQYYYDAPAVNVPEMHDQVQSPIITTQVLNIYKTKHLKGMKSVWLPYLLVKKLGSKAM 367
           PK+ YYY +P     +  D+++   +T  +LN Y    +       L  LL K   SKA 
Sbjct: 165 PKMIYYYLSPINESLQKLDRMKLLKLTGSLLNRYTNNPVVDSAQEHLDQLLNKSKNSKAF 224

Query: 368 LHPAGSQV 391
           +  +G+ +
Sbjct: 225 IDVSGNPI 232


>SB_7266| Best HMM Match : UPAR_LY6 (HMM E-Value=0.015)
          Length = 513

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = -3

Query: 587 TSLRFMIQGFTGKRFQFSYFFIFEVF 510
           TSL + IQ F+G  FQFSY+ I  +F
Sbjct: 283 TSLVYCIQHFSGVIFQFSYYRICALF 308


>SB_32327| Best HMM Match : ig (HMM E-Value=7.9e-23)
          Length = 932

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +1

Query: 175 ILLRS*DTILLRCSRCKCS*DARPSPIPYY 264
           +LLRS D IL R +  +CS +A P P+ +Y
Sbjct: 714 VLLRSGDVILTRSASLRCSTEAYP-PVTWY 742


>SB_47223| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 641

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 510 KDLEDEEVRELKALAGKPLYHEP 578
           K  +DE V E++ L   PLYH P
Sbjct: 604 KGPQDERVLEVRVLLASPLYHRP 626


>SB_28108| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1558

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 370 TPRWQSSEVDDVSAAFLDNLILTQMAQDAQRRREN 474
           TPRW+ SE +D     +DNL    M Q   R+++N
Sbjct: 21  TPRWELSEEEDSGGCEVDNL----MNQKTNRKQKN 51


>SB_10846| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 90

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +2

Query: 197 QYYYDAPAVNVPEMHDQVQSPIITTQVLNIYKTKHLKGMKS 319
           Q YY +   + P+ H QVQ P   T  L++ + + L+G K+
Sbjct: 15  QPYYTS--YDAPQSHTQVQQPTTDTDQLDMEQLRKLQGKKN 53


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,904,809
Number of Sequences: 59808
Number of extensions: 406846
Number of successful extensions: 982
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)