Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0381
         (688 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   4.8  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.3  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   8.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.3  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 247 LVVHLRNIYSGSIVVILYLRSVVIFIIGVLPRYLSPQRP 131
           + + + N+   S V     R V +  I VLPR+L  +RP
Sbjct: 316 VTIAVLNVNFRSPVTHRMARWVRVVFIQVLPRFLLIERP 354


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = -3

Query: 683 KLVLPVVNTSLVSR 642
           KLV PVVNTS V R
Sbjct: 42  KLVRPVVNTSDVLR 55


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = -3

Query: 683 KLVLPVVNTSLVSR 642
           KLV PVVNTS V R
Sbjct: 42  KLVRPVVNTSDVLR 55


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 110  KTYPMQGWPLWGQVPREYP 166
            K YP++  P W  V   YP
Sbjct: 1457 KDYPLRLGPCWHAVMTTYP 1475


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +3

Query: 498  RLRSKDLEDEEVRELKALAGKPLYHEPK 581
            RL     EDE  R   A  G+P+   P+
Sbjct: 1343 RLAQDSSEDESYRGPSASGGRPVPERPE 1370


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,471
Number of Sequences: 438
Number of extensions: 3749
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)