Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0381
         (688 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g41420.1 68415.m05111 proline-rich family protein contains pr...    30   1.3  
At4g16790.1 68417.m02536 hydroxyproline-rich glycoprotein family...    29   2.2  
At3g47760.1 68416.m05203 ABC transporter family protein probable...    28   6.7  
At3g15510.1 68416.m01966 no apical meristem (NAM) family protein...    28   6.7  
At2g42005.1 68415.m05196 amino acid transporter family protein l...    28   6.7  
At3g52460.1 68416.m05769 hydroxyproline-rich glycoprotein family...    27   8.8  
At2g45530.1 68415.m05662 zinc finger (C3HC4-type RING finger) fa...    27   8.8  
At2g36950.1 68415.m04531 heavy-metal-associated domain-containin...    27   8.8  
At2g27670.1 68415.m03353 hypothetical protein contains Pfam prof...    27   8.8  

>At2g41420.1 68415.m05111 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 98

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 18/47 (38%), Positives = 20/47 (42%)
 Frame = +2

Query: 116 YPMQGWPLWGQVPREYPDDEYYYAPKIQYYYDAPAVNVPEMHDQVQS 256
           YP QG+P  G  P+ YP   Y        Y  AP    P  H Q QS
Sbjct: 32  YPPQGYPQQGYPPQGYPQQGYPQQGYPPPY--APQYPPPPQHQQQQS 76


>At4g16790.1 68417.m02536 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 473

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
 Frame = +1

Query: 244 PSPIPYYYDPSAQY-LQNEAPQRHEERLAALPIGQETWFESDATPRWQSSEVDDVSAAFL 420
           P P+ YY  P  ++ L NE  +  E+++      +  W +     + Q +E +D   + L
Sbjct: 336 PPPVEYYKSPPTKFRLSNERRKSSEQKMKRNAPKKVWWSDPIVESKEQDTEKND-QRSNL 394

Query: 421 DNLILTQMAQDAQRRREN 474
            +  + +     QRR EN
Sbjct: 395 GSKAVEESENGEQRRGEN 412


>At3g47760.1 68416.m05203 ABC transporter family protein probable
           transport protein ABC-C, Homo sapiens, PIR2:S71363
          Length = 872

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -3

Query: 680 LVLPVVNTSLVSRSQLNKRIVCGIIIVXESGTSLRFMIQGFTGKRF-QFSYFFIF 519
           L+ PV+ TSLV   Q + RI+  +  + +   S  F++ G    RF  +S  FIF
Sbjct: 320 LLFPVMLTSLVYEKQQHLRIIMKMHGLGDEQVSELFLLVGLKFFRFNDYSIQFIF 374


>At3g15510.1 68416.m01966 no apical meristem (NAM) family protein
           (NAC2) identical to AtNAC2 [Arabidopsis thaliana]
           GI:12060426; contains Pfam PF02365: No apical meristem
           (NAM) domain; similar to jasmonic acid 2 GB:AAF04915
           from [Lycopersicon esculentum]
          Length = 364

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/68 (23%), Positives = 26/68 (38%)
 Frame = +2

Query: 125 QGWPLWGQVPREYPDDEYYYAPKIQYYYDAPAVNVPEMHDQVQSPIITTQVLNIYKTKHL 304
           Q W  +    R+YP+           Y+ A   + P +       +   + L  Y  K  
Sbjct: 71  QEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLASDGNQKVGVKKALVFYSGKPP 130

Query: 305 KGMKSVWL 328
           KG+KS W+
Sbjct: 131 KGVKSDWI 138


>At2g42005.1 68415.m05196 amino acid transporter family protein low
           similarity to proton/amino acid transporter 1 [Mus
           musculus] GI:21908024; contains Pfam profile PF01490:
           Transmembrane amino acid transporter protein
          Length = 413

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 257 PIITTQVLNIYKTKHLKGMKSVWLPYLLVKKLGSKAMLHP 376
           P++   V  I + +   GM  VWL +LLV  +   A+L P
Sbjct: 307 PLMMNPVFEIVERRFWSGMYCVWLRWLLVLAVTLVALLVP 346


>At3g52460.1 68416.m05769 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 300

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +2

Query: 104 QVKTYP-MQGWPLWGQVPREYPDDEYYYAPKIQY-YYDAP 217
           Q +TYP + G+P + Q P  YP+  Y  AP  QY Y  AP
Sbjct: 43  QQQTYPPVMGYPGYHQPPPPYPN--YPNAPYQQYPYAQAP 80


>At2g45530.1 68415.m05662 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 240

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -3

Query: 686 GKLVLPVVNTSLVSRSQLNKRIVCGIIIVXESGTSLRFMIQ 564
           G L+L V+ +  +  S L   I+ G+I+V   GT+LR  ++
Sbjct: 168 GGLMLDVLISITLGVSALPVNIIIGVIVVLGLGTALRLTLE 208


>At2g36950.1 68415.m04531 heavy-metal-associated domain-containing
           protein nearly identical to farnesylated protein ATFP2
           [GI:4097545] Pfam profile PF00403:
           Heavy-metal-associated domain
          Length = 386

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +2

Query: 125 QGWPLWGQVPREYPDDEYYYAPKIQYYYDAPAVNVPEM 238
           Q +P+ GQ    YP   Y YA +    Y  P VN P M
Sbjct: 340 QNYPVGGQ---SYPGSGYNYASESYVPYAQPNVNAPGM 374


>At2g27670.1 68415.m03353 hypothetical protein contains Pfam profile
           PF02713: Domain of unknown function DUF220
          Length = 293

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
 Frame = +1

Query: 256 PYYYDPS------AQYLQNEAPQRHEERLAALPIGQETWFESDAT 372
           P+Y+DP       A+Y +N +    + RL + P  +  W+++ AT
Sbjct: 46  PWYWDPDVDPKLKAEYKKNHSHVNRQARLWSGPNNKHPWYDAPAT 90


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,791,764
Number of Sequences: 28952
Number of extensions: 277078
Number of successful extensions: 872
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)