Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0380
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    30   0.28 
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    29   0.85 
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    27   3.4  
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.0  

>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 11/33 (33%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
 Frame = -3

Query: 279 LCICFFLIS--VLIFESLLYHVGFLVGRFVFLY 187
           +C+C+ +IS  +L+F  + + +GFLV ++  +Y
Sbjct: 644 ICLCYSIISPLILVFGLIYFIIGFLVYKYELIY 676


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
            Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1530

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 245  FLNRFSIMLVFWWEDLSFCICYPFFKIF 162
            FL RFS+     W +L   + Y FF IF
Sbjct: 1476 FLERFSMRYTHRWRNLGIFVGYVFFNIF 1503


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +1

Query: 109 WLCTHHFLLDCSFFSTNQNILKNG*QIQKDKSSHQKTNMIEKRF 240
           WLCT    L C+  S   +I+      +  KSS  KTN++   F
Sbjct: 348 WLCTFFHALQCAIIS---SIVSQWFFYRDTKSSATKTNLVSHFF 388


>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -3

Query: 276 CICFFLISVLIFESLLYHVG---FLVGRFVFLYLLPILQNILVG 154
           C CFFLI +L+     Y  G    L  R  F+++  ++  + VG
Sbjct: 71  CFCFFLIPLLLVNIAKYWKGKPPLLKRRMEFIWITLLILALAVG 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,824,405
Number of Sequences: 5004
Number of extensions: 58954
Number of successful extensions: 162
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)