Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0380
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0287 - 27525722-27525812,27525927-27526057,27526945-275270...    29   4.7  
03_02_0148 - 5928703-5928931,5929099-5929171,5929288-5929408,592...    28   6.2  

>02_05_0287 -
           27525722-27525812,27525927-27526057,27526945-27527022,
           27527080-27527186,27527302-27527380,27528001-27528096,
           27528192-27528443,27528691-27528840,27528953-27529277,
           27529373-27529584
          Length = 506

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 99  VGRMAMYTSFPVGLFFFFNQP-KYFEEWVTNTKRQIFPPEN 218
           VGR  + T+ P   ++ F Q  K FE W  +T  +IF  +N
Sbjct: 81  VGRPVVVTADPEMNYYVFQQEGKLFESWYPDTFTEIFGRDN 121


>03_02_0148 -
           5928703-5928931,5929099-5929171,5929288-5929408,
           5929907-5929952,5930361-5930571,5930837-5930986,
           5931122-5931179,5931285-5931400,5931986-5932091
          Length = 369

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 621 YYXGIPSYGNHSWITLGLKGLFLRYW 698
           YY G+   G   W   GLKGL+  YW
Sbjct: 191 YYNGMFHAGCSIWRDHGLKGLYAGYW 216


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,831,594
Number of Sequences: 37544
Number of extensions: 298963
Number of successful extensions: 513
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)