Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0380
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5981| Best HMM Match : No HMM Matches (HMM E-Value=.)               50   1e-06
SB_27180| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.68 
SB_23254| Best HMM Match : 7tm_1 (HMM E-Value=0)                       29   4.8  
SB_15681| Best HMM Match : Na_Ca_ex (HMM E-Value=1.9e-36)              29   4.8  
SB_881| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   6.3  

>SB_5981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 88

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 19/40 (47%), Positives = 29/40 (72%)
 Frame = +3

Query: 96  EVGRMAMYTSFPVGLFFFFNQPKYFEEWVTNTKRQIFPPE 215
           E   +A+Y  FPV LF++FN P+ +E++V N K QI+PP+
Sbjct: 17  ETSWIAVYVFFPVALFYYFNLPEIYEDYVNNKKGQIYPPD 56


>SB_27180| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 245

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
 Frame = +1

Query: 250 YRYEEETNAKSGIQVNQVYK*YNL-VFVVKRY*IHYVXXXXXXFHYYFNELKVTKFILQC 426
           +RY    N K G  + + Y+  NL V  + RY  H        F YY ++     +I + 
Sbjct: 83  FRYYRHDNLKVGY-IFRYYRHDNLKVGYIFRYYRHDNLKVGYIFRYYRHDNLKVGYIFRY 141

Query: 427 VLRKLIQFGFIR*FYRWINKLIAHLVLMLIKAHRHHNVK 543
                ++ G+I  +YR  N  + H    + + +RH N+K
Sbjct: 142 YRHDNLKVGYIFRYYRHDNLKVGH----IFRYYRHDNLK 176



 Score = 29.5 bits (63), Expect = 2.7
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
 Frame = +1

Query: 250 YRYEEETNAKSGIQVNQVYK*YNL-VFVVKRY*IHYVXXXXXXFHYYFNELKVTKFILQC 426
           +RY    N K G  + + Y+  NL V  + RY  H        F YY +E     +I + 
Sbjct: 139 FRYYRHDNLKVGY-IFRYYRHDNLKVGHIFRYYRHDNLKVGYIFRYYRHENLKVGYIFRY 197

Query: 427 VLRKLIQFGFIR*FYRWINKLIAHLVLMLIKAHRHHNVK 543
                ++ G+I  +YR  N  + +    + + +RH N+K
Sbjct: 198 YRHDNLKVGYIFRYYRHDNLKVGY----IFRYYRHDNLK 232


>SB_23254| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 349

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -2

Query: 229 LSCWFSGGKICLFVFVTHSSKYFGWLKKKNNPTGNDVYIAILP-TSSFQLPIV 74
           ++CW     I   V   H   Y  WL K+   T   V++ +LP  +S   PI+
Sbjct: 272 IACWAPFFIIMFIVQFCHDCVYNSWLTKEAQMTIGTVFVYVLPLLNSAANPII 324


>SB_15681| Best HMM Match : Na_Ca_ex (HMM E-Value=1.9e-36)
          Length = 183

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = -1

Query: 299 WFTWIPDFAFVSSSYLY*FLNRFSIMLVFWWEDLSFCICYPFFKIF 162
           W+    D  F S + +   +   S  ++ WWE L   +CY  + IF
Sbjct: 95  WWPLFRDCIFYSLALIILIIFFLSGDVIVWWESLVLLLCYFAYVIF 140


>SB_881| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 139

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 469 YRWINKLIAHLVLMLIKAHRHHNVKSKAPFY 561
           Y ++ K +A+ +   I  H HH++   AP Y
Sbjct: 37  YIYVTKYVAYRIRYKILLHVHHSINGNAPSY 67


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,060,908
Number of Sequences: 59808
Number of extensions: 363036
Number of successful extensions: 691
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)