Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0380
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    24   1.6  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   2.1  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   2.1  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   2.1  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   2.1  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   6.4  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 265 ETNAKSGIQVNQVYK*YNLVFVVKRY*IHYV 357
           +TN K+ + VN+ YK  NL    + Y  HYV
Sbjct: 438 QTN-KTWLPVNENYKSLNLAAQKREYYSHYV 467


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 485 LLIHL*NYLMNPN*ISFLNTHCSMNFVTFNSL 390
           LL+ + N ++ P  ISF N   S  ++ FN L
Sbjct: 96  LLLLVANLIILPVAISFFNDDLSTRWIAFNCL 127


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 485 LLIHL*NYLMNPN*ISFLNTHCSMNFVTFNSL 390
           LL+ + N ++ P  ISF N   S  ++ FN L
Sbjct: 96  LLLLVANLIILPVAISFFNDDLSTRWIAFNCL 127


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 485 LLIHL*NYLMNPN*ISFLNTHCSMNFVTFNSL 390
           LL+ + N ++ P  ISF N   S  ++ FN L
Sbjct: 96  LLLLVANLIILPVAISFFNDDLSTRWIAFNCL 127


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -2

Query: 190 VFVTHSSKYFGWLKKKNNPTGNDVYIAILPTSSFQL 83
           VF+  +  +  W K  +NP G D   +++P  ++QL
Sbjct: 78  VFLGLNLGFLAWAK--HNPRGKDALWSLVPHMAWQL 111


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/11 (72%), Positives = 11/11 (100%)
 Frame = +2

Query: 254 DMRKKQMQSLE 286
           D+RKKQ++SLE
Sbjct: 372 DLRKKQLKSLE 382


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,175
Number of Sequences: 438
Number of extensions: 4035
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)