Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0379
(840 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 182 6e-47
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 100 3e-22
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 94 3e-20
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 89 5e-19
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 60 4e-10
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 58 2e-09
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 49 7e-07
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 33 0.050
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 30 0.36
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.47
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 26 5.8
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 5.8
SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|ch... 26 5.8
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 7.6
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 26 7.6
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 182 bits (443), Expect = 6e-47
Identities = 92/131 (70%), Positives = 99/131 (75%), Gaps = 1/131 (0%)
Frame = +2
Query: 254 NEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKAN 433
+EAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+N
Sbjct: 56 DEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSN 115
Query: 434 REKMTQIMFXXFNTPAMYVAIQAVLRC-TRPVVPPVSCWTXATVSPTPCPSTRDTHFPHA 610
REKMTQI+F FN PA YVAIQAVL + + V+ T P PHA
Sbjct: 116 REKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHT-VPIYEGYALPHA 174
Query: 611 ILRLDLAGRDL 643
I+RLDLAGRDL
Sbjct: 175 IMRLDLAGRDL 185
Score = 113 bits (273), Expect = 2e-26
Identities = 50/60 (83%), Positives = 56/60 (93%)
Frame = +3
Query: 93 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGMRHRAK 272
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVG ++K
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 100 bits (239), Expect = 3e-22
Identities = 50/145 (34%), Positives = 81/145 (55%)
Frame = +2
Query: 215 RDGRYGTEGLLCRNEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 394
+ G + ++ +EA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P
Sbjct: 43 KTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRK 102
Query: 395 VLLTEAPLNPKANREKMTQIMFXXFNTPAMYVAIQAVLRCTRPVVPPVSCWTXATVSPTP 574
+LLTE P+NP ANREKM + MF + +YVAIQAVL +
Sbjct: 103 ILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHI 162
Query: 575 CPSTRDTHFPHAILRLDLAGRDLHR 649
P H + RLD+AGRD R
Sbjct: 163 VPVYESVVLNHLVGRLDVAGRDATR 187
Score = 48.0 bits (109), Expect = 2e-06
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +3
Query: 99 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 203
E A +V+DNG+G K G+A D+ PR FPSIVGRP
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 93.9 bits (223), Expect = 3e-20
Identities = 42/86 (48%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Frame = +2
Query: 254 NEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 430
N+A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE PLNP
Sbjct: 78 NDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPE 137
Query: 431 NREKMTQIMFXXFNTPAMYVAIQAVL 508
NRE +IMF FN +Y+A+QAVL
Sbjct: 138 NRENTAEIMFESFNCAGLYIAVQAVL 163
Score = 42.7 bits (96), Expect = 6e-05
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = +3
Query: 111 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYVGMR 260
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY+ +
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASK 58
Score = 36.7 bits (81), Expect = 0.004
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +1
Query: 532 TGIVLDXGDGVSHTVPIYEGYAL 600
TG V+D GDGV+H +P+ EGY +
Sbjct: 180 TGTVVDSGDGVTHIIPVAEGYVI 202
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 89.4 bits (212), Expect = 5e-19
Identities = 50/134 (37%), Positives = 74/134 (55%), Gaps = 4/134 (2%)
Frame = +2
Query: 254 NEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEAPLNPKA 430
+EAQ+ RG+L ++ PIE GI+ NW DME+IW + + + +L PEEHP+LLTE PL
Sbjct: 60 SEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIR 119
Query: 431 NREKMTQIMFXXFNTPAMYVAIQAVL---RCTRPVVPPVSCWTXATVSPTPCPSTRDTHF 601
N+EK+ + + N PA+ ++Q VL R + C T S P
Sbjct: 120 NKEKIAEYFYETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTHS---VPIYDGFSI 176
Query: 602 PHAILRLDLAGRDL 643
P AI + ++ GRD+
Sbjct: 177 PSAIQQEEIGGRDV 190
Score = 63.7 bits (148), Expect = 3e-11
Identities = 27/48 (56%), Positives = 35/48 (72%)
Frame = +3
Query: 111 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVG 254
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVG 59
Score = 54.4 bits (125), Expect = 2e-08
Identities = 21/31 (67%), Positives = 29/31 (93%)
Frame = +1
Query: 511 LYASGRTTGIVLDXGDGVSHTVPIYEGYALP 603
LYAS RTTGIVL+ GDG++H+VPIY+G+++P
Sbjct: 147 LYASARTTGIVLECGDGLTHSVPIYDGFSIP 177
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 60.1 bits (139), Expect = 4e-10
Identities = 28/73 (38%), Positives = 39/73 (53%)
Frame = +2
Query: 281 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 460
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 461 XXFNTPAMYVAIQ 499
PA Y+A Q
Sbjct: 123 ESLRCPATYLAKQ 135
Score = 40.3 bits (90), Expect = 3e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3
Query: 96 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 197
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 58.0 bits (134), Expect = 2e-09
Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Frame = +2
Query: 215 RDGRYGTEGLLCRNEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 391
RD + L N+ + G ++ + P E +++NWD ME++ +TF +L + EH
Sbjct: 58 RDRKLSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEH 116
Query: 392 PVLLTEAPLNPKANREKMTQIMFXXFNTPAMYVAIQAV 505
P+ +TE NP R MT+++F +N P++ I +
Sbjct: 117 PICMTEPLANPTYVRSTMTELLFELYNAPSVAYGIDGL 154
Score = 35.9 bits (79), Expect = 0.007
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +3
Query: 111 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 206
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
Score = 27.1 bits (57), Expect = 3.3
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +1
Query: 529 TTGIVLDXGDGVSHTVPIYEG 591
++GIVL+ G+ SH +P+ G
Sbjct: 165 SSGIVLNLGNAASHVIPVLNG 185
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 49.2 bits (112), Expect = 7e-07
Identities = 20/67 (29%), Positives = 38/67 (56%)
Frame = +2
Query: 305 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFXXFNTPAM 484
+GI+ +W+ W +L+V P E+ +++TE NP++ R+++ + F + PA
Sbjct: 74 NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAF 133
Query: 485 YVAIQAV 505
Y+ QAV
Sbjct: 134 YLTKQAV 140
Score = 36.7 bits (81), Expect = 0.004
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +3
Query: 96 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 197
EE+ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 33.1 bits (72), Expect = 0.050
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Frame = +2
Query: 296 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFX 463
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ F
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 464 XFNTPAMYVAIQAVL 508
P +A + ++
Sbjct: 172 ECQVPGFTIAYEPLM 186
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 30.3 bits (65), Expect = 0.36
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Frame = +2
Query: 356 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFXXFNTPAM---YVAIQ 499
+Y L E+HP+LLT+ A L P+ + ++ +I NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.47
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -3
Query: 253 PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 92
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 26.2 bits (55), Expect = 5.8
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = +2
Query: 521 PVVPPVSCWTXATVSPTPCPSTRDTHFPHAILRLDLAGRDLHRLPHEXSSTSG-GLIRSI 697
P++PP+ C A + TP S + P ++ L+ + +PH+ +S S G +R I
Sbjct: 452 PLIPPLKCDPNAFSASTPA-SGAVSRTPSSVSLSSLSNVN-SSMPHKPASQSNVGPVR-I 508
Query: 698 TTAEPGNSFVTSKXXAVXNV 757
++ F +S +V N+
Sbjct: 509 SSNRRSRKFSSSSRVSVSNL 528
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 5.8
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -3
Query: 232 PIPTITP*WRGLPTIEGNTARGASSPAKPAL 140
P+PT P LPT NT + P+ PAL
Sbjct: 74 PVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|chr
2|||Manual
Length = 157
Score = 26.2 bits (55), Expect = 5.8
Identities = 26/111 (23%), Positives = 43/111 (38%)
Frame = +2
Query: 362 NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFXXFNTPAMYVAIQAVLRCTRPVVPPVS 541
N LRV H +L + N + ++F F P ++V ++++ VS
Sbjct: 2 NGLRVFEHVHCSVLYK--FNNIVKFDLYNVLLFLLFLLPVLFVFARSMIEFDDTYPESVS 59
Query: 542 CWTXATVSPTPCPSTRDTHFPHAILRLDLAGRDLHRLPHEXSSTSGGLIRS 694
P+ P R TH PH ++ G+ + H S+ L RS
Sbjct: 60 ----KRARPSQKPPLRSTHLPHLLIFALFVGKHIACFHHLLLSSLPCLPRS 106
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.8 bits (54), Expect = 7.6
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +2
Query: 521 PVVPPVSCWTXATVSPTPCPSTRDTHFPHAILRLDLAGRDLHRLPHEXSSTSGG 682
PV P S +++ PT P T P+A + D+H LP +ST+ G
Sbjct: 811 PVQPKTS--QASSILPT-VPRTTSYTSPYATTSSHITPADVHPLPPPSTSTTAG 861
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -1
Query: 252 LHKSPSVPYRPSRPDGGAFPRSRGTR 175
+ K+PS PY SRP A S TR
Sbjct: 310 ISKAPSYPYSSSRPSASASLASSPTR 335
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,388,469
Number of Sequences: 5004
Number of extensions: 72992
Number of successful extensions: 213
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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