Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0376
         (831 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.09 |pcn1|pcn|PCNA |Schizosaccharomyces pombe|chr 2|||M...   116   3e-27
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    27   2.5  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.5  
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    26   5.7  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   5.7  
SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1||...    26   5.7  
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual      25   10.0 
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    25   10.0 

>SPBC16D10.09 |pcn1|pcn|PCNA |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 260

 Score =  116 bits (280), Expect = 3e-27
 Identities = 56/147 (38%), Positives = 92/147 (62%)
 Frame = +3

Query: 246 SVTAMDNSHVSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDN 425
           S+ AMD+SHV+LVS+ +++DGF+ YRCDRNI++G+NL ++SK+L+CA ++D VT+KA+D 
Sbjct: 36  SLQAMDSSHVALVSMLIKSDGFEPYRCDRNIALGINLNALSKVLRCAQNEDLVTLKAEDT 95

Query: 426 ADNVTFVFESPNQEKVSDYEMKLMNLDLNI*VFQRLNTAALFACQVLNLLESAGISHSLE 605
            + +  VFES   +++SDY++KLM++D        +   A                 +L 
Sbjct: 96  PEVLNLVFESEKNDRISDYDVKLMDIDQEHLGIPDIEYDATITMPAAEFQRITRDLLTLS 155

Query: 606 NQW*FHAPKKE*KFSATGDIGSANVKL 686
           +    +A K+  +FS  GDIG+ +  L
Sbjct: 156 DSVTINASKEGVRFSCKGDIGNGSTTL 182



 Score = 53.2 bits (122), Expect = 4e-08
 Identities = 23/38 (60%), Positives = 31/38 (81%)
 Frame = +1

Query: 142 MFEARLLRSSILKKVLEAIKDLLTQATFDCYDNGIQLQ 255
           M EAR  ++++LKK+L+AIK+L+T A FDC DNGI LQ
Sbjct: 1   MLEARFQQAALLKKLLDAIKELVTDANFDCNDNGISLQ 38


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 372 SLTCCLDSCPLRCSYRSGTC 313
           SL+C  DSC + C    GTC
Sbjct: 435 SLSCHSDSCKVSCQNEDGTC 454


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +1

Query: 91  LLLIFNKIIEVIH*NINMFEARLLRSSILKKVLEAIKD 204
           L +  N+ +  IH  I+ +EAR++   IL K+ E +++
Sbjct: 462 LSISLNENVRAIHKLISRYEARIVSPEILTKIQEQVEN 499


>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1188

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 20/76 (26%), Positives = 32/76 (42%)
 Frame = +3

Query: 258  MDNSHVSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNV 437
            +D+SH  LV     A  F+ YRC +  SMG+  G +  +     D+   ++         
Sbjct: 959  LDDSHEQLVDNDDEAAIFETYRCLK--SMGLRRGYVKDMKNPLADQ-RASLDESRETTTA 1015

Query: 438  TFVFESPNQEKVSDYE 485
            +  FES +     D E
Sbjct: 1016 SSKFESDDSVDTEDEE 1031


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +1

Query: 607  INGDFMHQRRSKSSRQQATSAQRTSSWAQXASIDQE--GRRQSSLKWEEPVNS 759
            +N +FM   +  SS+   +S    SS     SID+E    +    +WE+  N+
Sbjct: 1899 MNIEFMVDEQDASSQNDDSSFDEASSHGDVISIDEEDLDNQGEEFEWEDEDNA 1951


>SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 393

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +1

Query: 187 LEAIKDLLTQATFDCYDNGIQLQLWTTLMCLSCHSLSELM 306
           L+ I   + ++  D ++   ++Q WTTL+C     L +L+
Sbjct: 105 LDNITVFIQKSMEDLFEKTEKIQYWTTLLCTKHSQLFDLV 144


>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +1

Query: 637 SKSSRQQATSAQRTSSWAQXASIDQEGRRQSSLKWE 744
           ++ S Q+      ++SW+   S D     Q + KWE
Sbjct: 317 TRESLQRIYQKLTSNSWSSPVSYDDSNSSQYNFKWE 352


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 390 DKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMNL 503
           D ++V  +A DN+D   FV E P +   SD ++K   L
Sbjct: 519 DMESVPTEAADNSDFPKFVTEQP-KTLASDVQLKSYQL 555


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,176,115
Number of Sequences: 5004
Number of extensions: 63517
Number of successful extensions: 178
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)