Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0376
         (831 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1136 + 34369994-34370312,34370398-34370550,34370648-343707...   140   2e-33
06_01_0984 + 7640574-7641689                                           32   0.49 
11_02_0124 + 8568012-8568392,8568532-8568798,8568963-8569364           30   2.0  
02_05_0688 - 30918499-30919602                                         30   2.0  
11_02_0131 + 8651175-8651313,8651567-8651743,8651761-8651879,865...    30   2.6  
01_06_1430 - 37309737-37309946,37310049-37310100,37310348-373104...    29   4.5  

>02_05_1136 +
           34369994-34370312,34370398-34370550,34370648-34370745,
           34371563-34371784
          Length = 263

 Score =  140 bits (338), Expect = 2e-33
 Identities = 76/175 (43%), Positives = 109/175 (62%)
 Frame = +3

Query: 246 SVTAMDNSHVSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDN 425
           S+ AMD+SHV+LV+L LR++GF+ YRCDRN+SMGMNL +M+K+L+CAG+ D +TIKA D 
Sbjct: 36  SLQAMDSSHVALVALLLRSEGFEHYRCDRNLSMGMNLNNMAKMLRCAGNDDIITIKADDG 95

Query: 426 ADNVTFVFESPNQEKVSDYEMKLMNLDLNI*VFQRLNTAALFACQVLNLLESAGISHSLE 605
           +D VTF+FESPNQ+K++D+EMKLM++D            A+                S+ 
Sbjct: 96  SDTVTFMFESPNQDKIADFEMKLMDIDSEHLGIPDSEYQAIVRMPSSEFSRICKDLSSIG 155

Query: 606 NQW*FHAPKKE*KFSATGDIGSANVKLGPXRFY*PRGKKAVVIEMGRARQLLTFA 770
           +       K+  KFS  GDIG+AN+     +    + + A +IEM +    LTFA
Sbjct: 156 DTVIISVTKEGVKFSTAGDIGTANIVCRQNKTV-DKPEDATIIEM-QEPVSLTFA 208



 Score = 75.4 bits (177), Expect = 5e-14
 Identities = 31/49 (63%), Positives = 41/49 (83%)
 Frame = +2

Query: 497 EFGSEHLGIPETEYSCTIRMPSSEFARICRDLSQFGESMVISCTKEGVK 643
           +  SEHLGIP++EY   +RMPSSEF+RIC+DLS  G++++IS TKEGVK
Sbjct: 120 DIDSEHLGIPDSEYQAIVRMPSSEFSRICKDLSSIGDTVIISVTKEGVK 168



 Score = 49.2 bits (112), Expect = 4e-06
 Identities = 22/38 (57%), Positives = 28/38 (73%)
 Frame = +1

Query: 142 MFEARLLRSSILKKVLEAIKDLLTQATFDCYDNGIQLQ 255
           M E RL++ S+LKKVLEAI++L+T A FDC   G  LQ
Sbjct: 1   MLELRLVQGSLLKKVLEAIRELVTDANFDCSGTGFSLQ 38


>06_01_0984 + 7640574-7641689
          Length = 371

 Score = 32.3 bits (70), Expect = 0.49
 Identities = 18/56 (32%), Positives = 30/56 (53%)
 Frame = -3

Query: 394 LSPAHLRIFDMLPRFMPIEMFLSQRYLSKPSARRVSDTRDT*ELSIAVTEFHCHSN 227
           L+ A   + D+LPR +P  ++L    L+    RR+ +TR      +A  E+ CH+N
Sbjct: 143 LNYARNHLADLLPRCVPRAIYLDSDVLAVDDVRRLWETRLPAAAVVAAPEY-CHAN 197


>11_02_0124 + 8568012-8568392,8568532-8568798,8568963-8569364
          Length = 349

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 554 MPSSEFARICRDLSQFGESMVISCTKEGVK 643
           +PS++F  I + L QF +S+V  C + G+K
Sbjct: 61  LPSNDFNHIFKSLGQFEQSIVQDCARIGLK 90


>02_05_0688 - 30918499-30919602
          Length = 367

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 17/56 (30%), Positives = 30/56 (53%)
 Frame = -3

Query: 394 LSPAHLRIFDMLPRFMPIEMFLSQRYLSKPSARRVSDTRDT*ELSIAVTEFHCHSN 227
           L+ A   + D+LP+ +P  ++L    L+    RR+ +TR      +A  E+ CH+N
Sbjct: 144 LNYARNYLADLLPKCVPRAIYLDSDVLAVDDVRRLWETRLPAAAVVAAPEY-CHAN 198


>11_02_0131 +
           8651175-8651313,8651567-8651743,8651761-8651879,
           8652179-8652589
          Length = 281

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 554 MPSSEFARICRDLSQFGESMVISCTKEGVK 643
           +PS++F +I R L QF +S +  CT  G++
Sbjct: 10  LPSNDFNQIFRSLEQFKQSTMQHCTHRGLQ 39


>01_06_1430 -
           37309737-37309946,37310049-37310100,37310348-37310427,
           37310538-37310606,37310710-37310843,37311173-37311332,
           37311483-37311554,37312113-37312246,37312386-37312521,
           37313273-37313416
          Length = 396

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 360 SMSKILKCAGDK-DTVTIKAQDNADNVTFVFESPNQEKV 473
           S+ K+    G K + +++K Q  ADN+ F FE P ++ V
Sbjct: 238 SLEKVFSEVGSKSEMLSVKLQREADNLLFNFEEPLKDYV 276


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,889,558
Number of Sequences: 37544
Number of extensions: 388041
Number of successful extensions: 870
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)