Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0376
         (831 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23876| Best HMM Match : PCNA_C (HMM E-Value=0)                     120   1e-27

>SB_23876| Best HMM Match : PCNA_C (HMM E-Value=0)
          Length = 225

 Score =  120 bits (289), Expect = 1e-27
 Identities = 52/83 (62%), Positives = 67/83 (80%)
 Frame = +3

Query: 258 MDNSHVSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNV 437
           MD+SHV LVS+ L ADGFD YRCDR +S+GM    +SKI+KCAG++D +TI A+D  D V
Sbjct: 1   MDSSHVCLVSVQLNADGFDPYRCDRTLSIGMKTSLLSKIIKCAGNEDRITIHAEDTGDTV 60

Query: 438 TFVFESPNQEKVSDYEMKLMNLD 506
           TF FESPN+EK S+Y+MKLM++D
Sbjct: 61  TFSFESPNEEKTSEYKMKLMDID 83



 Score = 72.1 bits (169), Expect = 5e-13
 Identities = 31/65 (47%), Positives = 44/65 (67%)
 Frame = +2

Query: 446 F*EPKSRESL*LRDEAYEFGSEHLGIPETEYSCTIRMPSSEFARICRDLSQFGESMVISC 625
           F  P   ++   + +  +  SEHLGIP+  Y   I+MPS+EF RICRDLSQ G+S+ I+C
Sbjct: 64  FESPNEEKTSEYKMKLMDIDSEHLGIPDQTYDAVIKMPSAEFQRICRDLSQMGDSVQIAC 123

Query: 626 TKEGV 640
           TK+G+
Sbjct: 124 TKDGI 128


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,400,556
Number of Sequences: 59808
Number of extensions: 459218
Number of successful extensions: 1075
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2335516755
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)