Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0376
         (831 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000298-1|AAC48257.2|  229|Caenorhabditis elegans Pcna (prolife...    95   5e-20
AL132862-22|CAB70233.1|  169|Caenorhabditis elegans Hypothetical...    33   0.19 
Z48795-7|CAA88731.1|  347|Caenorhabditis elegans Hypothetical pr...    30   2.3  
U88184-3|AAK31519.1|  648|Caenorhabditis elegans Hypothetical pr...    28   9.4  

>AF000298-1|AAC48257.2|  229|Caenorhabditis elegans Pcna
           (proliferating cell nuclearantigen) homolog protein 1
           protein.
          Length = 229

 Score = 95.1 bits (226), Expect = 5e-20
 Identities = 53/150 (35%), Positives = 81/150 (54%), Gaps = 1/150 (0%)
 Frame = +3

Query: 246 SVTAMDNSHVSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDN 425
           S+ AMD+SHV+LVSL L    FD YRCDR I++G++L +MSK LKCA + DT  +K ++N
Sbjct: 2   SLQAMDSSHVALVSLKLEVGLFDTYRCDRTINLGLSLANMSKALKCANNDDTCMLKYEEN 61

Query: 426 -ADNVTFVFESPNQEKVSDYEMKLMNLDLNI*VFQRLNTAALFACQVLNLLESAGISHSL 602
             D++ F F  P ++K  D  +K+M++D         + A +         ++     + 
Sbjct: 62  EGDSIIFTFADPKRDKTQDVTVKMMDIDSEHLGIPDQDYAVVCEMPAGEFQKTCKDLSTF 121

Query: 603 ENQW*FHAPKKE*KFSATGDIGSANVKLGP 692
            +     A K    F+  GDIGS+ V   P
Sbjct: 122 SDSLNITATKAGIVFTGKGDIGSSVVTYSP 151


>AL132862-22|CAB70233.1|  169|Caenorhabditis elegans Hypothetical
           protein Y73F8A.27 protein.
          Length = 169

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 16/66 (24%), Positives = 32/66 (48%)
 Frame = +3

Query: 276 SLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFVFES 455
           S++ L +RA GF ++  +       N   M+  ++  GD +    K++D   N+T+V   
Sbjct: 3   SVLRLAMRAKGFSRFLAETQAFPVKNRHFMTSSVRKTGDFEYEDPKSEDEVVNITYVLRD 62

Query: 456 PNQEKV 473
             + K+
Sbjct: 63  GTERKI 68


>Z48795-7|CAA88731.1|  347|Caenorhabditis elegans Hypothetical
           protein R05H5.1 protein.
          Length = 347

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -2

Query: 485 LVIRDFLLIWALKNKCDIVSIILCFYCNCIL 393
           ++  DF L++     C  VS   C++C+C +
Sbjct: 82  VIFSDFSLVYIFHGPCKYVSPWFCYFCHCFM 112


>U88184-3|AAK31519.1|  648|Caenorhabditis elegans Hypothetical
           protein F36H5.8 protein.
          Length = 648

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +2

Query: 554 MPSSEFARICRDL-SQFGESMVISCTKEGVKVLGNRRHRL 670
           +P+ +    C+DL + +    +I  + EG+K +G+RR R+
Sbjct: 59  LPTIDKLTFCKDLLNAYNFQRIIMQSYEGIKAIGSRRTRI 98


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,535,626
Number of Sequences: 27780
Number of extensions: 356909
Number of successful extensions: 877
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)