Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0376
         (831 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g29570.1 68415.m03591 proliferating cell nuclear antigen 2 (P...   143   1e-34
At1g07370.1 68414.m00786 proliferating cell nuclear antigen 1 (P...   143   1e-34
At1g22160.1 68414.m02770 senescence-associated protein-related s...    32   0.54 
At3g50080.1 68416.m05475 F-box family protein (FBL16) contains s...    29   3.8  

>At2g29570.1 68415.m03591 proliferating cell nuclear antigen 2
           (PCNA2) identical to SP|Q9ZW35 Proliferating cell
           nuclear antigen 2 (PCNA 2) {Arabidopsis thaliana};
           nearly identical to SP|Q43124 Proliferating cell nuclear
           antigen (PCNA) {Brassica napus}; contains Pfam profiles
           PF00705: Proliferating cell nuclear antigen N-terminal
           domain, PF02747: Proliferating cell nuclear antigen
           C-terminal domain
          Length = 264

 Score =  143 bits (346), Expect = 1e-34
 Identities = 76/165 (46%), Positives = 105/165 (63%)
 Frame = +3

Query: 246 SVTAMDNSHVSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDN 425
           S+ AMD+SHV+LVSL LR++GF+ YRCDRN+SMGMNLG+MSK+LKCAG+ D +TIKA D 
Sbjct: 36  SLQAMDSSHVALVSLLLRSEGFEHYRCDRNLSMGMNLGNMSKMLKCAGNDDIITIKADDG 95

Query: 426 ADNVTFVFESPNQEKVSDYEMKLMNLDLNI*VFQRLNTAALFACQVLNLLESAGISHSLE 605
           +D VTF+FESP Q+K++D+EMKLM++D            ++                S+ 
Sbjct: 96  SDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPDAEYHSIVRMPSGEFSRICKDLSSIG 155

Query: 606 NQW*FHAPKKE*KFSATGDIGSANVKLGPXRFY*PRGKKAVVIEM 740
           +       K+  KFS  GDIG+AN+ L        + + A+VIEM
Sbjct: 156 DTVVISVTKEGVKFSTAGDIGTANIVLRQNTTV-DKPEDAIVIEM 199



 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 31/49 (63%), Positives = 39/49 (79%)
 Frame = +2

Query: 497 EFGSEHLGIPETEYSCTIRMPSSEFARICRDLSQFGESMVISCTKEGVK 643
           +  SEHLGIP+ EY   +RMPS EF+RIC+DLS  G+++VIS TKEGVK
Sbjct: 120 DIDSEHLGIPDAEYHSIVRMPSGEFSRICKDLSSIGDTVVISVTKEGVK 168



 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 22/38 (57%), Positives = 27/38 (71%)
 Frame = +1

Query: 142 MFEARLLRSSILKKVLEAIKDLLTQATFDCYDNGIQLQ 255
           M E RL++ S+LKKVLEA+KDL+  A FDC   G  LQ
Sbjct: 1   MLELRLVQGSLLKKVLEAVKDLVNDANFDCSTTGFSLQ 38


>At1g07370.1 68414.m00786 proliferating cell nuclear antigen 1
           (PCNA1) identical to SP|Q9M7Q7 Proliferating cellular
           nuclear antigen 1 (PCNA 1) {Arabidopsis thaliana};
           nearly identical to SP|Q43124 Proliferating cell nuclear
           antigen (PCNA) {Brassica napus}; contains Pfam profiles
           PF00705: Proliferating cell nuclear antigen N-terminal
           domain, PF02747: Proliferating cell nuclear antigen
           C-terminal domain
          Length = 263

 Score =  143 bits (346), Expect = 1e-34
 Identities = 76/165 (46%), Positives = 104/165 (63%)
 Frame = +3

Query: 246 SVTAMDNSHVSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDN 425
           S+ AMD+SHV+LVSL LR++GF+ YRCDRN+SMGMNLG+MSK+LKCAG+ D +TIKA D 
Sbjct: 36  SLQAMDSSHVALVSLLLRSEGFEHYRCDRNLSMGMNLGNMSKMLKCAGNDDIITIKADDG 95

Query: 426 ADNVTFVFESPNQEKVSDYEMKLMNLDLNI*VFQRLNTAALFACQVLNLLESAGISHSLE 605
            D VTF+FESP Q+K++D+EMKLM++D            ++                S+ 
Sbjct: 96  GDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPDAEYHSIVRMPSNEFSRICKDLSSIG 155

Query: 606 NQW*FHAPKKE*KFSATGDIGSANVKLGPXRFY*PRGKKAVVIEM 740
           +       K+  KFS  GDIG+AN+ L        + + A+VIEM
Sbjct: 156 DTVVISVTKEGVKFSTAGDIGTANIVLRQNTTV-DKPEDAIVIEM 199



 Score = 73.3 bits (172), Expect = 2e-13
 Identities = 31/49 (63%), Positives = 40/49 (81%)
 Frame = +2

Query: 497 EFGSEHLGIPETEYSCTIRMPSSEFARICRDLSQFGESMVISCTKEGVK 643
           +  SEHLGIP+ EY   +RMPS+EF+RIC+DLS  G+++VIS TKEGVK
Sbjct: 120 DIDSEHLGIPDAEYHSIVRMPSNEFSRICKDLSSIGDTVVISVTKEGVK 168



 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 22/38 (57%), Positives = 27/38 (71%)
 Frame = +1

Query: 142 MFEARLLRSSILKKVLEAIKDLLTQATFDCYDNGIQLQ 255
           M E RL++ S+LKKVLE+IKDL+  A FDC   G  LQ
Sbjct: 1   MLELRLVQGSLLKKVLESIKDLVNDANFDCSSTGFSLQ 38


>At1g22160.1 68414.m02770 senescence-associated protein-related
           similar to senescence-associated protein SAG102
           (GI:22331931) [Arabidopsis thaliana]
          Length = 147

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = +3

Query: 387 GDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMNLDLNI*VFQRLNTAALFA 554
           G +    IK   +   + F    P++++ SD++++L+N+D +  V QRL    L A
Sbjct: 4   GKRQRPPIKRTTSLSEIKFDLNQPSEQEPSDHQIQLVNVDEHRQVHQRLLDQRLLA 59


>At3g50080.1 68416.m05475 F-box family protein (FBL16) contains
           similarity to SKP1 interacting partner 2 GI:10716949
           from [Arabidopsis thaliana]; contains Pfam profile:
           PF00646 F-box domain
          Length = 522

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +2

Query: 509 EHLGIPETEYSCTIRMPSSEFARICRDLSQFGESMVISCTKEGVKVLGNRRHRLS 673
           E +G  + +Y  T  +P    A I + LS          +K  + V G  RHRLS
Sbjct: 29  ESIGFEDGDYDFTANLPDDCLAHIFQFLSAGDRKRCSLVSKRWLLVDGQNRHRLS 83


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,409,998
Number of Sequences: 28952
Number of extensions: 326701
Number of successful extensions: 709
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1911862400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)