Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0375
         (806 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr 1|||Ma...    50   4e-07
SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate syntha...    28   1.4  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    25   9.6  

>SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 127

 Score = 50.0 bits (114), Expect = 4e-07
 Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
 Frame = +1

Query: 103 MSWQDYVDKQLMASRCVTKAAIAGHDGN-VWAKSEGFEISKDEVAKIVAGFE 255
           MSWQ YVD  L+ +  + +AAI    G+ VWA S GF +S  E+  + AGF+
Sbjct: 1   MSWQAYVDTSLLGTGKIDRAAIVSRAGDSVWAASAGFNLSPQEIQGLAAGFQ 52



 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 17/46 (36%), Positives = 28/46 (60%)
 Frame = +2

Query: 341 ELGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCGY 478
           +L K G+ C+ T+  +++S Y E   P +AA + E L +YL+  GY
Sbjct: 82  KLQKEGIICVATKLCILVSHYPETTLPGEAAKITEALADYLVGVGY 127


>SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 541

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +2

Query: 329 YHPRELGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLG 454
           +HP + G  G+ C+K   A +   YE+PI  + +  +    G
Sbjct: 188 FHPEKSGSAGLRCLK---AFLTGNYEQPISGEASKLIENSFG 226


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 185 MCGQSRKASKFQKMKWRR 238
           MC  S++   FQK KW R
Sbjct: 19  MCNYSKRLDTFQKKKWPR 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,171,444
Number of Sequences: 5004
Number of extensions: 64911
Number of successful extensions: 129
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)